Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb1P63158 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb1P63158 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Hmgb1P63158 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb1P63158 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC16.41■□□□□ 0.22
Hmgb1P63158 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Hmgb1P63158 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb1P63158 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb1P63158 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb1P63158 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb1P63158 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Hmgb1P63158 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb1P63158 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Hmgb1P63158 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Hmgb1P63158 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC16.4■□□□□ 0.22
Hmgb1P63158 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb1P63158 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb1P63158 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb1P63158 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb1P63158 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb1P63158 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb1P63158 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb1P63158 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb1P63158 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb1P63158 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC16.4■□□□□ 0.22
Hmgb1P63158 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC16.4■□□□□ 0.22
Hmgb1P63158 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC16.4■□□□□ 0.22
Hmgb1P63158 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb1P63158 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb1P63158 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Hmgb1P63158 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb1P63158 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb1P63158 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb1P63158 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb1P63158 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Hmgb1P63158 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb1P63158 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb1P63158 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb1P63158 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Hmgb1P63158 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
Hmgb1P63158 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb1P63158 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC16.4■□□□□ 0.22
Hmgb1P63158 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC16.39■□□□□ 0.22
Hmgb1P63158 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Hmgb1P63158 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Hmgb1P63158 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Hmgb1P63158 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Hmgb1P63158 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Hmgb1P63158 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Hmgb1P63158 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Hmgb1P63158 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC16.39■□□□□ 0.21
Hmgb1P63158 Gm24589-201ENSMUST00000116692 94 ntBASIC16.39■□□□□ 0.21
Hmgb1P63158 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Hmgb1P63158 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC16.39■□□□□ 0.21
Hmgb1P63158 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Hmgb1P63158 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Hmgb1P63158 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Hmgb1P63158 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC16.39■□□□□ 0.21
Hmgb1P63158 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Hmgb1P63158 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC16.39■□□□□ 0.21
Hmgb1P63158 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Hmgb1P63158 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Hmgb1P63158 Gm38042-201ENSMUST00000191614 5208 ntBASIC16.38■□□□□ 0.21
Hmgb1P63158 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Hmgb1P63158 Gm40377-201ENSMUST00000204604 2015 ntBASIC16.38■□□□□ 0.21
Hmgb1P63158 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Hmgb1P63158 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Hmgb1P63158 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Hmgb1P63158 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Hmgb1P63158 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Hmgb1P63158 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
Hmgb1P63158 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
Hmgb1P63158 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Hmgb1P63158 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC16.38■□□□□ 0.21
Hmgb1P63158 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Hmgb1P63158 Gm6550-201ENSMUST00000187574 993 ntBASIC16.38■□□□□ 0.21
Hmgb1P63158 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Hmgb1P63158 CT010506.4-201ENSMUST00000225457 351 ntBASIC16.38■□□□□ 0.21
Hmgb1P63158 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Hmgb1P63158 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Hmgb1P63158 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Hmgb1P63158 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Hmgb1P63158 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Hmgb1P63158 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Hmgb1P63158 Gm45760-201ENSMUST00000212190 1782 ntBASIC16.38■□□□□ 0.21
Hmgb1P63158 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Hmgb1P63158 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC16.38■□□□□ 0.21
Hmgb1P63158 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb1P63158 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Hmgb1P63158 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb1P63158 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb1P63158 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb1P63158 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb1P63158 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb1P63158 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb1P63158 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb1P63158 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb1P63158 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb1P63158 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Hmgb1P63158 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms