Protein–RNA interactions for Protein: P59240

Nphp4, Nephrocystin-4, mousemouse

Predictions only

Length 1,425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nphp4P59240 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nphp4P59240 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nphp4P59240 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Nphp4P59240 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nphp4P59240 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC20.05■□□□□ 0.8
Nphp4P59240 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Nphp4P59240 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nphp4P59240 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Nphp4P59240 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Nphp4P59240 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nphp4P59240 Gm9252-201ENSMUST00000172364 1602 ntBASIC20.05■□□□□ 0.8
Nphp4P59240 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC20.05■□□□□ 0.8
Nphp4P59240 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC20.05■□□□□ 0.8
Nphp4P59240 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nphp4P59240 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC20.05■□□□□ 0.8
Nphp4P59240 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nphp4P59240 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Nphp4P59240 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Nphp4P59240 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nphp4P59240 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nphp4P59240 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nphp4P59240 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC20.04■□□□□ 0.8
Nphp4P59240 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Nphp4P59240 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Nphp4P59240 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Nphp4P59240 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
Nphp4P59240 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Nphp4P59240 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nphp4P59240 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nphp4P59240 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nphp4P59240 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nphp4P59240 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nphp4P59240 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nphp4P59240 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nphp4P59240 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nphp4P59240 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nphp4P59240 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nphp4P59240 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nphp4P59240 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Nphp4P59240 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nphp4P59240 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Nphp4P59240 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nphp4P59240 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nphp4P59240 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nphp4P59240 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nphp4P59240 Gm6473-201ENSMUST00000188572 1210 ntBASIC20.03■□□□□ 0.8
Nphp4P59240 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC20.03■□□□□ 0.8
Nphp4P59240 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Nphp4P59240 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Nphp4P59240 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Nphp4P59240 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
Nphp4P59240 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Nphp4P59240 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nphp4P59240 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nphp4P59240 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nphp4P59240 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nphp4P59240 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC20.03■□□□□ 0.8
Nphp4P59240 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nphp4P59240 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nphp4P59240 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Nphp4P59240 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nphp4P59240 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC20.02■□□□□ 0.8
Nphp4P59240 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Nphp4P59240 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC20.02■□□□□ 0.8
Nphp4P59240 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Nphp4P59240 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Nphp4P59240 Gtpbp10-211ENSMUST00000198799 648 ntBASIC20.02■□□□□ 0.8
Nphp4P59240 Arhgef33-209ENSMUST00000225223 714 ntBASIC20.02■□□□□ 0.8
Nphp4P59240 AC121598.1-201ENSMUST00000228224 1019 ntBASIC20.02■□□□□ 0.8
Nphp4P59240 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC20.02■□□□□ 0.8
Nphp4P59240 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Nphp4P59240 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Nphp4P59240 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Nphp4P59240 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Nphp4P59240 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Nphp4P59240 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Nphp4P59240 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Nphp4P59240 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Nphp4P59240 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Nphp4P59240 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC20.02■□□□□ 0.8
Nphp4P59240 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Nphp4P59240 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
Nphp4P59240 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
Nphp4P59240 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Nphp4P59240 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC20.02■□□□□ 0.79
Nphp4P59240 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC20.02■□□□□ 0.79
Nphp4P59240 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
Nphp4P59240 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC20.02■□□□□ 0.79
Nphp4P59240 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC20.02■□□□□ 0.79
Nphp4P59240 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Nphp4P59240 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Nphp4P59240 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Nphp4P59240 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC20.01■□□□□ 0.79
Nphp4P59240 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Nphp4P59240 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Nphp4P59240 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Nphp4P59240 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Nphp4P59240 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Nphp4P59240 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Nphp4P59240 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 40.9 ms