Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Rfx1P48377 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Rfx1P48377 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Rfx1P48377 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Rfx1P48377 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Rfx1P48377 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Rfx1P48377 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Rfx1P48377 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Rfx1P48377 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Rfx1P48377 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
Rfx1P48377 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC17.85■□□□□ 0.45
Rfx1P48377 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Rfx1P48377 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC17.85■□□□□ 0.45
Rfx1P48377 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC17.85■□□□□ 0.45
Rfx1P48377 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Rfx1P48377 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Rfx1P48377 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Rfx1P48377 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Rfx1P48377 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Rfx1P48377 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC17.85■□□□□ 0.45
Rfx1P48377 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Rfx1P48377 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Rfx1P48377 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Rfx1P48377 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Rfx1P48377 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC17.85■□□□□ 0.45
Rfx1P48377 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
Rfx1P48377 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Rfx1P48377 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
Rfx1P48377 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Rfx1P48377 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Rfx1P48377 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC17.85■□□□□ 0.45
Rfx1P48377 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Rfx1P48377 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
Rfx1P48377 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Rfx1P48377 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rfx1P48377 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rfx1P48377 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rfx1P48377 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC17.84■□□□□ 0.45
Rfx1P48377 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC17.84■□□□□ 0.45
Rfx1P48377 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rfx1P48377 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rfx1P48377 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Rfx1P48377 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC17.84■□□□□ 0.45
Rfx1P48377 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC17.84■□□□□ 0.45
Rfx1P48377 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC17.84■□□□□ 0.45
Rfx1P48377 Gm6659-201ENSMUST00000174752 547 ntBASIC17.84■□□□□ 0.45
Rfx1P48377 AC093926.2-201ENSMUST00000214468 1228 ntBASIC17.84■□□□□ 0.45
Rfx1P48377 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rfx1P48377 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rfx1P48377 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rfx1P48377 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rfx1P48377 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC17.84■□□□□ 0.45
Rfx1P48377 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Rfx1P48377 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
Rfx1P48377 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Rfx1P48377 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
Rfx1P48377 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
Rfx1P48377 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC17.83■□□□□ 0.45
Rfx1P48377 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Rfx1P48377 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC17.83■□□□□ 0.45
Rfx1P48377 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Rfx1P48377 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Rfx1P48377 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Rfx1P48377 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Rfx1P48377 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
Rfx1P48377 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Rfx1P48377 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Rfx1P48377 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Rfx1P48377 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Rfx1P48377 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Rfx1P48377 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Rfx1P48377 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Rfx1P48377 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC17.83■□□□□ 0.44
Rfx1P48377 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Rfx1P48377 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Rfx1P48377 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Rfx1P48377 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Rfx1P48377 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Rfx1P48377 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Rfx1P48377 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Rfx1P48377 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx1P48377 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC17.82■□□□□ 0.44
Rfx1P48377 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx1P48377 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx1P48377 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx1P48377 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx1P48377 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx1P48377 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC17.82■□□□□ 0.44
Rfx1P48377 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx1P48377 Gm12497-201ENSMUST00000138778 237 ntBASIC17.82■□□□□ 0.44
Rfx1P48377 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC17.82■□□□□ 0.44
Rfx1P48377 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx1P48377 AC121577.1-201ENSMUST00000227302 707 ntBASIC17.82■□□□□ 0.44
Rfx1P48377 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx1P48377 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx1P48377 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx1P48377 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx1P48377 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx1P48377 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx1P48377 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms