Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Msx1P13297 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Msx1P13297 Cdk5rap1-202ENSMUST00000109730 1227 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Msx1P13297 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Msx1P13297 Gm6226-201ENSMUST00000117765 1146 ntBASIC14.16□□□□□ -0.14
Msx1P13297 Rprl2-201ENSMUST00000157150 290 ntBASIC14.16□□□□□ -0.14
Msx1P13297 Gm8318-201ENSMUST00000182954 872 ntBASIC14.16□□□□□ -0.14
Msx1P13297 Arhgef33-209ENSMUST00000225223 714 ntBASIC14.16□□□□□ -0.14
Msx1P13297 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC14.16□□□□□ -0.14
Msx1P13297 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Msx1P13297 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Msx1P13297 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC14.16□□□□□ -0.14
Msx1P13297 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Msx1P13297 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Msx1P13297 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Msx1P13297 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Msx1P13297 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Msx1P13297 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Msx1P13297 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
Msx1P13297 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Msx1P13297 Gm13294-201ENSMUST00000121757 1330 ntBASIC14.15□□□□□ -0.14
Msx1P13297 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Msx1P13297 Gm38318-201ENSMUST00000195769 1706 ntBASIC14.15□□□□□ -0.14
Msx1P13297 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Msx1P13297 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Msx1P13297 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Msx1P13297 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC14.15□□□□□ -0.14
Msx1P13297 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Msx1P13297 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Msx1P13297 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Msx1P13297 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Msx1P13297 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Msx1P13297 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Msx1P13297 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Msx1P13297 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Msx1P13297 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
Msx1P13297 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Msx1P13297 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC14.15□□□□□ -0.14
Msx1P13297 Gm43474-201ENSMUST00000196415 774 ntBASIC14.15□□□□□ -0.14
Msx1P13297 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Msx1P13297 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC14.15□□□□□ -0.14
Msx1P13297 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC14.15□□□□□ -0.14
Msx1P13297 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC14.15□□□□□ -0.14
Msx1P13297 Gm45878-201ENSMUST00000211839 241 ntBASIC14.15□□□□□ -0.14
Msx1P13297 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC14.15□□□□□ -0.14
Msx1P13297 Gm19324-201ENSMUST00000213229 1169 ntBASIC14.15□□□□□ -0.14
Msx1P13297 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC14.15□□□□□ -0.14
Msx1P13297 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Msx1P13297 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Msx1P13297 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Msx1P13297 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Msx1P13297 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Msx1P13297 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Msx1P13297 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Msx1P13297 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Msx1P13297 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.15
Msx1P13297 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC14.15□□□□□ -0.15
Msx1P13297 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Msx1P13297 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Msx1P13297 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Msx1P13297 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Msx1P13297 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
Msx1P13297 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Msx1P13297 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Msx1P13297 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Msx1P13297 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Msx1P13297 Gm12962-202ENSMUST00000144212 691 ntTSL 2 BASIC14.14□□□□□ -0.15
Msx1P13297 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
Msx1P13297 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Msx1P13297 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC14.14□□□□□ -0.15
Msx1P13297 Gm5626-201ENSMUST00000222151 1058 ntBASIC14.14□□□□□ -0.15
Msx1P13297 Gemin6-201ENSMUST00000069486 1134 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Msx1P13297 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Msx1P13297 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Msx1P13297 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Msx1P13297 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Msx1P13297 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Msx1P13297 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Msx1P13297 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Msx1P13297 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Msx1P13297 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Msx1P13297 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Msx1P13297 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Msx1P13297 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Msx1P13297 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC14.13□□□□□ -0.15
Msx1P13297 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Msx1P13297 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Msx1P13297 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Msx1P13297 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Msx1P13297 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC14.13□□□□□ -0.15
Msx1P13297 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Msx1P13297 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Msx1P13297 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC14.13□□□□□ -0.15
Msx1P13297 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Msx1P13297 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC14.13□□□□□ -0.15
Msx1P13297 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC14.13□□□□□ -0.15
Msx1P13297 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC14.13□□□□□ -0.15
Msx1P13297 Gm18889-201ENSMUST00000174284 929 ntBASIC14.13□□□□□ -0.15
Msx1P13297 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC14.13□□□□□ -0.15
Msx1P13297 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 41.8 ms