Protein–RNA interactions for Protein: O35235

Tnfsf11, Tumor necrosis factor ligand superfamily member 11, mousemouse

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf11O35235 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Tnfsf11O35235 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC11.65□□□□□ -0.54
Tnfsf11O35235 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Tnfsf11O35235 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Tnfsf11O35235 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Tnfsf11O35235 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Tnfsf11O35235 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Tnfsf11O35235 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Tnfsf11O35235 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Tnfsf11O35235 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Tnfsf11O35235 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Tnfsf11O35235 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
Tnfsf11O35235 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Tnfsf11O35235 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Tnfsf11O35235 CT025610.1-201ENSMUST00000224552 1786 ntBASIC11.65□□□□□ -0.54
Tnfsf11O35235 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Tnfsf11O35235 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
Tnfsf11O35235 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Tnfsf11O35235 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Tnfsf11O35235 Gm15565-201ENSMUST00000118890 427 ntBASIC11.65□□□□□ -0.54
Tnfsf11O35235 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC11.65□□□□□ -0.54
Tnfsf11O35235 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC11.65□□□□□ -0.54
Tnfsf11O35235 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Tnfsf11O35235 Gm1818-201ENSMUST00000169406 1184 ntBASIC11.65□□□□□ -0.54
Tnfsf11O35235 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
Tnfsf11O35235 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC11.65□□□□□ -0.54
Tnfsf11O35235 AC130713.1-201ENSMUST00000228853 1096 ntBASIC11.65□□□□□ -0.54
Tnfsf11O35235 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Tnfsf11O35235 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
Tnfsf11O35235 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Tnfsf11O35235 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
Tnfsf11O35235 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
Tnfsf11O35235 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Tnfsf11O35235 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Tnfsf11O35235 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Tnfsf11O35235 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC11.65□□□□□ -0.54
Tnfsf11O35235 AC166491.1-201ENSMUST00000227053 2308 ntBASIC11.65□□□□□ -0.54
Tnfsf11O35235 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
Tnfsf11O35235 Matn2-206ENSMUST00000228570 2798 ntBASIC11.65□□□□□ -0.54
Tnfsf11O35235 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.55
Tnfsf11O35235 Gm44645-201ENSMUST00000205492 1653 ntBASIC11.65□□□□□ -0.55
Tnfsf11O35235 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC11.65□□□□□ -0.55
Tnfsf11O35235 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Tnfsf11O35235 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.55
Tnfsf11O35235 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.55
Tnfsf11O35235 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC11.65□□□□□ -0.55
Tnfsf11O35235 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.55
Tnfsf11O35235 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Tnfsf11O35235 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Tnfsf11O35235 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Gm6433-201ENSMUST00000118634 875 ntBASIC11.64□□□□□ -0.55
Tnfsf11O35235 AC153881.2-201ENSMUST00000214877 204 ntBASIC11.64□□□□□ -0.55
Tnfsf11O35235 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Tnfsf11O35235 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Tnfsf11O35235 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 73.5 ms