Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Chd3B1AR17 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Chd3B1AR17 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Chd3B1AR17 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Chd3B1AR17 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
Chd3B1AR17 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC14.61□□□□□ -0.07
Chd3B1AR17 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Chd3B1AR17 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Chd3B1AR17 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Chd3B1AR17 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Chd3B1AR17 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Chd3B1AR17 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Chd3B1AR17 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Chd3B1AR17 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Chd3B1AR17 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Chd3B1AR17 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC14.6□□□□□ -0.07
Chd3B1AR17 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Chd3B1AR17 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Chd3B1AR17 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Chd3B1AR17 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Chd3B1AR17 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Chd3B1AR17 Sybu-209ENSMUST00000228639 4113 ntBASIC14.6□□□□□ -0.07
Chd3B1AR17 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Chd3B1AR17 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
Chd3B1AR17 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Chd3B1AR17 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Chd3B1AR17 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Chd3B1AR17 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Chd3B1AR17 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Chd3B1AR17 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Chd3B1AR17 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Chd3B1AR17 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Chd3B1AR17 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC14.6□□□□□ -0.07
Chd3B1AR17 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Chd3B1AR17 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Chd3B1AR17 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Chd3B1AR17 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Chd3B1AR17 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Chd3B1AR17 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Chd3B1AR17 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Chd3B1AR17 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Chd3B1AR17 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Chd3B1AR17 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Chd3B1AR17 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Chd3B1AR17 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Chd3B1AR17 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Chd3B1AR17 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
Chd3B1AR17 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Chd3B1AR17 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
Chd3B1AR17 Gm5779-201ENSMUST00000218467 910 ntBASIC14.59□□□□□ -0.07
Chd3B1AR17 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Chd3B1AR17 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Chd3B1AR17 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Chd3B1AR17 Asic1-205ENSMUST00000228185 1818 ntBASIC14.59□□□□□ -0.07
Chd3B1AR17 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Chd3B1AR17 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Chd3B1AR17 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Chd3B1AR17 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Chd3B1AR17 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Chd3B1AR17 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Chd3B1AR17 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Chd3B1AR17 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Chd3B1AR17 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Chd3B1AR17 Gm6756-201ENSMUST00000180647 1620 ntBASIC14.58□□□□□ -0.07
Chd3B1AR17 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Chd3B1AR17 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Chd3B1AR17 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.07
Chd3B1AR17 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Chd3B1AR17 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC14.58□□□□□ -0.08
Chd3B1AR17 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Chd3B1AR17 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
Chd3B1AR17 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Chd3B1AR17 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Chd3B1AR17 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Chd3B1AR17 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Chd3B1AR17 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Chd3B1AR17 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Chd3B1AR17 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC14.58□□□□□ -0.08
Chd3B1AR17 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Chd3B1AR17 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Chd3B1AR17 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Chd3B1AR17 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Chd3B1AR17 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Chd3B1AR17 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Chd3B1AR17 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Chd3B1AR17 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Chd3B1AR17 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Chd3B1AR17 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Chd3B1AR17 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Chd3B1AR17 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
Chd3B1AR17 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Chd3B1AR17 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Chd3B1AR17 Gm45212-201ENSMUST00000205831 3403 ntBASIC14.58□□□□□ -0.08
Chd3B1AR17 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC14.58□□□□□ -0.08
Chd3B1AR17 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Chd3B1AR17 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Chd3B1AR17 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Chd3B1AR17 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Chd3B1AR17 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Chd3B1AR17 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms