Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Smco4Q9JIS3 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Smco4Q9JIS3 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Smco4Q9JIS3 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC12.04□□□□□ -0.48
Smco4Q9JIS3 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Smco4Q9JIS3 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC12.04□□□□□ -0.48
Smco4Q9JIS3 Gm12626-201ENSMUST00000117339 1983 ntBASIC12.04□□□□□ -0.48
Smco4Q9JIS3 Gm12623-201ENSMUST00000119849 1983 ntBASIC12.04□□□□□ -0.48
Smco4Q9JIS3 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Smco4Q9JIS3 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Smco4Q9JIS3 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Smco4Q9JIS3 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Smco4Q9JIS3 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Smco4Q9JIS3 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Smco4Q9JIS3 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Smco4Q9JIS3 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Smco4Q9JIS3 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Smco4Q9JIS3 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Smco4Q9JIS3 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Smco4Q9JIS3 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC12.04□□□□□ -0.48
Smco4Q9JIS3 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Smco4Q9JIS3 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Smco4Q9JIS3 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Smco4Q9JIS3 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Ssr1-204ENSMUST00000225319 1610 ntBASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smco4Q9JIS3 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Smco4Q9JIS3 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Smco4Q9JIS3 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Smco4Q9JIS3 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Smco4Q9JIS3 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Smco4Q9JIS3 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Smco4Q9JIS3 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
Smco4Q9JIS3 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Gm44981-201ENSMUST00000205549 1943 ntBASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Alkbh1-212ENSMUST00000185301 408 ntBASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Gm26524-201ENSMUST00000192339 390 ntBASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Gm10305-201ENSMUST00000195331 2475 ntBASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Gm44065-201ENSMUST00000203184 3527 ntBASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Smco4Q9JIS3 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
Smco4Q9JIS3 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smco4Q9JIS3 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
Smco4Q9JIS3 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smco4Q9JIS3 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Smco4Q9JIS3 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Smco4Q9JIS3 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC12.01□□□□□ -0.49
Smco4Q9JIS3 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smco4Q9JIS3 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Smco4Q9JIS3 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smco4Q9JIS3 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms