Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 Gm37305-201ENSMUST00000195714 4279 ntBASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Ddx56Q9D0R4 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
Ddx56Q9D0R4 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 AC133598.3-202ENSMUST00000224219 531 ntBASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 AC122901.1-201ENSMUST00000214203 1790 ntBASIC15.7■□□□□ 0.1
Ddx56Q9D0R4 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Gm11960-202ENSMUST00000181063 2858 ntBASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Ddx56Q9D0R4 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Gm13597-201ENSMUST00000121239 375 ntBASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC15.68■□□□□ 0.1
Ddx56Q9D0R4 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Ddx56Q9D0R4 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ddx56Q9D0R4 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms