Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC14.58□□□□□ -0.08
Msh4Q99MT2 AC151836.1-202ENSMUST00000226259 753 ntBASIC14.58□□□□□ -0.08
Msh4Q99MT2 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Msh4Q99MT2 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Msh4Q99MT2 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Msh4Q99MT2 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Msh4Q99MT2 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Msh4Q99MT2 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Msh4Q99MT2 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Msh4Q99MT2 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Msh4Q99MT2 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Msh4Q99MT2 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
Msh4Q99MT2 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Gm10605-202ENSMUST00000183019 3198 ntBASIC14.57□□□□□ -0.08
Msh4Q99MT2 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Gm11779-201ENSMUST00000118541 368 ntBASIC14.57□□□□□ -0.08
Msh4Q99MT2 Gm12260-201ENSMUST00000122447 411 ntBASIC14.57□□□□□ -0.08
Msh4Q99MT2 Gm18489-201ENSMUST00000172565 551 ntBASIC14.57□□□□□ -0.08
Msh4Q99MT2 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Gm8000-201ENSMUST00000188378 592 ntBASIC14.57□□□□□ -0.08
Msh4Q99MT2 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msh4Q99MT2 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msh4Q99MT2 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Msh4Q99MT2 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msh4Q99MT2 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC14.56□□□□□ -0.08
Msh4Q99MT2 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC14.56□□□□□ -0.08
Msh4Q99MT2 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Gm4899-201ENSMUST00000178708 719 ntBASIC14.56□□□□□ -0.08
Msh4Q99MT2 Gm7286-201ENSMUST00000182691 1007 ntBASIC14.56□□□□□ -0.08
Msh4Q99MT2 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Gm7787-201ENSMUST00000216858 688 ntBASIC14.56□□□□□ -0.08
Msh4Q99MT2 AC159093.1-201ENSMUST00000227779 380 ntBASIC14.56□□□□□ -0.08
Msh4Q99MT2 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Msh4Q99MT2 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Gm9727-201ENSMUST00000161387 555 ntBASIC14.55□□□□□ -0.08
Msh4Q99MT2 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC14.55□□□□□ -0.08
Msh4Q99MT2 Gm43332-201ENSMUST00000202511 1044 ntBASIC14.55□□□□□ -0.08
Msh4Q99MT2 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms