Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Gm6198-201ENSMUST00000191337 2929 ntBASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc28bQ8CEG5 Gm28182-201ENSMUST00000188354 2477 ntBASIC14.78□□□□□ -0.04
Ccdc28bQ8CEG5 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc28bQ8CEG5 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC14.78□□□□□ -0.04
Ccdc28bQ8CEG5 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc28bQ8CEG5 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
Ccdc28bQ8CEG5 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Ccdc28bQ8CEG5 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc28bQ8CEG5 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc28bQ8CEG5 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc28bQ8CEG5 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc28bQ8CEG5 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc28bQ8CEG5 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Ccdc28bQ8CEG5 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC14.78□□□□□ -0.04
Ccdc28bQ8CEG5 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC14.78□□□□□ -0.04
Ccdc28bQ8CEG5 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC14.78□□□□□ -0.04
Ccdc28bQ8CEG5 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc28bQ8CEG5 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc28bQ8CEG5 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC14.78□□□□□ -0.04
Ccdc28bQ8CEG5 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
Ccdc28bQ8CEG5 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc28bQ8CEG5 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc28bQ8CEG5 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc28bQ8CEG5 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc28bQ8CEG5 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ccdc28bQ8CEG5 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ccdc28bQ8CEG5 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ccdc28bQ8CEG5 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ccdc28bQ8CEG5 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ccdc28bQ8CEG5 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC14.77□□□□□ -0.04
Ccdc28bQ8CEG5 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Ccdc28bQ8CEG5 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Ccdc28bQ8CEG5 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ccdc28bQ8CEG5 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ccdc28bQ8CEG5 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ccdc28bQ8CEG5 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Ccdc28bQ8CEG5 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ccdc28bQ8CEG5 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Gm15565-201ENSMUST00000118890 427 ntBASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Gm15794-201ENSMUST00000120182 631 ntBASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Gm11950-201ENSMUST00000121615 838 ntBASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Gm6345-202ENSMUST00000180900 204 ntBASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Ighv6-1-201ENSMUST00000193612 343 ntBASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 AC153881.2-201ENSMUST00000214877 204 ntBASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 AC158538.2-201ENSMUST00000225455 906 ntBASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Vti1a-206ENSMUST00000225529 1244 ntBASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 AC112142.1-201ENSMUST00000228796 918 ntBASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ccdc28bQ8CEG5 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC14.76□□□□□ -0.05
Ccdc28bQ8CEG5 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ccdc28bQ8CEG5 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ccdc28bQ8CEG5 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Ccdc28bQ8CEG5 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ccdc28bQ8CEG5 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC14.76□□□□□ -0.05
Ccdc28bQ8CEG5 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Ccdc28bQ8CEG5 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC14.76□□□□□ -0.05
Ccdc28bQ8CEG5 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ccdc28bQ8CEG5 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ccdc28bQ8CEG5 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ccdc28bQ8CEG5 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ccdc28bQ8CEG5 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Ccdc28bQ8CEG5 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Ccdc28bQ8CEG5 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms