Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
Vps53Q8CCB4 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Vps53Q8CCB4 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Vps53Q8CCB4 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
Vps53Q8CCB4 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
Vps53Q8CCB4 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Vps53Q8CCB4 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Vps53Q8CCB4 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Vps53Q8CCB4 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Vps53Q8CCB4 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Vps53Q8CCB4 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Vps53Q8CCB4 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Vps53Q8CCB4 Gm7286-201ENSMUST00000182691 1007 ntBASIC17.39■□□□□ 0.37
Vps53Q8CCB4 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Vps53Q8CCB4 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC17.39■□□□□ 0.37
Vps53Q8CCB4 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC17.39■□□□□ 0.37
Vps53Q8CCB4 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Vps53Q8CCB4 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Vps53Q8CCB4 Gm10584-201ENSMUST00000207036 2628 ntBASIC17.39■□□□□ 0.37
Vps53Q8CCB4 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Vps53Q8CCB4 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Vps53Q8CCB4 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Vps53Q8CCB4 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Vps53Q8CCB4 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Vps53Q8CCB4 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Vps53Q8CCB4 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Vps53Q8CCB4 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Vps53Q8CCB4 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Vps53Q8CCB4 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Vps53Q8CCB4 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Vps53Q8CCB4 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Vps53Q8CCB4 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC17.38■□□□□ 0.37
Vps53Q8CCB4 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Vps53Q8CCB4 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Vps53Q8CCB4 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Vps53Q8CCB4 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Vps53Q8CCB4 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC17.38■□□□□ 0.37
Vps53Q8CCB4 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Vps53Q8CCB4 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC17.38■□□□□ 0.37
Vps53Q8CCB4 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Vps53Q8CCB4 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Vps53Q8CCB4 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Vps53Q8CCB4 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Vps53Q8CCB4 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Vps53Q8CCB4 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Vps53Q8CCB4 AC154412.1-201ENSMUST00000226540 2786 ntBASIC17.38■□□□□ 0.37
Vps53Q8CCB4 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Vps53Q8CCB4 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Vps53Q8CCB4 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Vps53Q8CCB4 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC17.37■□□□□ 0.37
Vps53Q8CCB4 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC17.37■□□□□ 0.37
Vps53Q8CCB4 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Vps53Q8CCB4 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Vps53Q8CCB4 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Vps53Q8CCB4 Gm4899-201ENSMUST00000178708 719 ntBASIC17.37■□□□□ 0.37
Vps53Q8CCB4 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Vps53Q8CCB4 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC17.37■□□□□ 0.37
Vps53Q8CCB4 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC17.37■□□□□ 0.37
Vps53Q8CCB4 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Vps53Q8CCB4 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Vps53Q8CCB4 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Vps53Q8CCB4 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Vps53Q8CCB4 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Vps53Q8CCB4 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC17.37■□□□□ 0.37
Vps53Q8CCB4 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Gm15358-201ENSMUST00000119249 520 ntBASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Gm14057-201ENSMUST00000120631 482 ntBASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Gm44872-201ENSMUST00000207864 420 ntBASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC17.36■□□□□ 0.37
Vps53Q8CCB4 AC159295.1-201ENSMUST00000225326 940 ntBASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Gm5049-201ENSMUST00000195878 1590 ntBASIC17.36■□□□□ 0.37
Vps53Q8CCB4 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Vps53Q8CCB4 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Vps53Q8CCB4 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Vps53Q8CCB4 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
Vps53Q8CCB4 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Vps53Q8CCB4 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Vps53Q8CCB4 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Vps53Q8CCB4 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Vps53Q8CCB4 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms