Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Usp40Q8BWR4 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC20.42■□□□□ 0.86
Usp40Q8BWR4 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
Usp40Q8BWR4 Gm14767-201ENSMUST00000121559 586 ntBASIC20.42■□□□□ 0.86
Usp40Q8BWR4 Mir7684-201ENSMUST00000183858 60 ntBASIC20.42■□□□□ 0.86
Usp40Q8BWR4 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Usp40Q8BWR4 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Usp40Q8BWR4 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp40Q8BWR4 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp40Q8BWR4 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Usp40Q8BWR4 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
Usp40Q8BWR4 BC037039-201ENSMUST00000192003 2205 ntBASIC20.42■□□□□ 0.86
Usp40Q8BWR4 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp40Q8BWR4 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp40Q8BWR4 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp40Q8BWR4 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
Usp40Q8BWR4 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp40Q8BWR4 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp40Q8BWR4 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp40Q8BWR4 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC20.41■□□□□ 0.86
Usp40Q8BWR4 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp40Q8BWR4 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp40Q8BWR4 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp40Q8BWR4 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Usp40Q8BWR4 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC20.41■□□□□ 0.86
Usp40Q8BWR4 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC20.41■□□□□ 0.86
Usp40Q8BWR4 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Usp40Q8BWR4 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC20.41■□□□□ 0.86
Usp40Q8BWR4 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Usp40Q8BWR4 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Usp40Q8BWR4 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC20.41■□□□□ 0.86
Usp40Q8BWR4 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp40Q8BWR4 AC124751.1-201ENSMUST00000222716 1408 ntBASIC20.41■□□□□ 0.86
Usp40Q8BWR4 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Usp40Q8BWR4 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp40Q8BWR4 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp40Q8BWR4 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp40Q8BWR4 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC20.41■□□□□ 0.86
Usp40Q8BWR4 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp40Q8BWR4 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usp40Q8BWR4 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usp40Q8BWR4 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usp40Q8BWR4 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Usp40Q8BWR4 Gm21009-201ENSMUST00000197169 1669 ntBASIC20.4■□□□□ 0.86
Usp40Q8BWR4 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC20.4■□□□□ 0.86
Usp40Q8BWR4 Gm44344-201ENSMUST00000200287 129 ntBASIC20.4■□□□□ 0.86
Usp40Q8BWR4 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Usp40Q8BWR4 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usp40Q8BWR4 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usp40Q8BWR4 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usp40Q8BWR4 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
Usp40Q8BWR4 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usp40Q8BWR4 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Usp40Q8BWR4 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Usp40Q8BWR4 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Usp40Q8BWR4 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Usp40Q8BWR4 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
Usp40Q8BWR4 Gm16011-201ENSMUST00000121567 2662 ntBASIC20.39■□□□□ 0.85
Usp40Q8BWR4 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Usp40Q8BWR4 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC20.39■□□□□ 0.85
Usp40Q8BWR4 Gm24543-201ENSMUST00000103867 82 ntBASIC20.39■□□□□ 0.85
Usp40Q8BWR4 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC20.39■□□□□ 0.85
Usp40Q8BWR4 Gm15487-201ENSMUST00000122373 465 ntBASIC20.39■□□□□ 0.85
Usp40Q8BWR4 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Usp40Q8BWR4 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC20.39■□□□□ 0.85
Usp40Q8BWR4 Shd-206ENSMUST00000225145 998 ntBASIC20.39■□□□□ 0.85
Usp40Q8BWR4 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Usp40Q8BWR4 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Usp40Q8BWR4 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Usp40Q8BWR4 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC20.39■□□□□ 0.85
Usp40Q8BWR4 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Gm29310-201ENSMUST00000185468 696 ntBASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Gm21825-201ENSMUST00000185728 696 ntBASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Gm29109-201ENSMUST00000185895 696 ntBASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Gm21896-201ENSMUST00000186520 696 ntBASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Gm21873-201ENSMUST00000186728 696 ntBASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Gm21794-201ENSMUST00000187056 696 ntBASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Gm21880-201ENSMUST00000187275 696 ntBASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Gm21826-201ENSMUST00000187451 696 ntBASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Gm21198-201ENSMUST00000188393 696 ntBASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Gm21749-201ENSMUST00000189343 696 ntBASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Gm21901-201ENSMUST00000189568 696 ntBASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Gm29424-201ENSMUST00000189716 696 ntBASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Gm28599-201ENSMUST00000189838 694 ntBASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Gm21867-201ENSMUST00000189917 696 ntBASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Gm29269-201ENSMUST00000190087 696 ntBASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Gm21722-201ENSMUST00000190153 696 ntBASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Gm28423-201ENSMUST00000190701 696 ntBASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Gm21899-201ENSMUST00000190745 696 ntBASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Gm21910-201ENSMUST00000191163 696 ntBASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Gm21849-201ENSMUST00000191571 696 ntBASIC20.38■□□□□ 0.85
Usp40Q8BWR4 Gm28678-201ENSMUST00000191593 696 ntBASIC20.38■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms