Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC15.67■□□□□ 0.1
Hmgb4Q6P8W9 Gm7063-201ENSMUST00000186840 981 ntBASIC15.67■□□□□ 0.1
Hmgb4Q6P8W9 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Hmgb4Q6P8W9 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Hmgb4Q6P8W9 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Hmgb4Q6P8W9 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC15.67■□□□□ 0.1
Hmgb4Q6P8W9 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Hmgb4Q6P8W9 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Hmgb4Q6P8W9 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Hmgb4Q6P8W9 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Hmgb4Q6P8W9 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Hmgb4Q6P8W9 Gm37305-201ENSMUST00000195714 4279 ntBASIC15.67■□□□□ 0.1
Hmgb4Q6P8W9 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Hmgb4Q6P8W9 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC15.67■□□□□ 0.1
Hmgb4Q6P8W9 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Hmgb4Q6P8W9 AC174678.1-201ENSMUST00000228007 2749 ntBASIC15.67■□□□□ 0.1
Hmgb4Q6P8W9 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Gm45133-201ENSMUST00000207548 2773 ntBASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Gm45612-201ENSMUST00000211320 160 ntBASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 AC160980.1-201ENSMUST00000224136 970 ntBASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 AC158982.1-201ENSMUST00000228377 901 ntBASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb4Q6P8W9 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Gm20553-201ENSMUST00000204205 844 ntBASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Gm44872-201ENSMUST00000207864 420 ntBASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Tfap2a-203ENSMUST00000223869 2037 ntBASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb4Q6P8W9 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
Hmgb4Q6P8W9 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC15.64■□□□□ 0.1
Hmgb4Q6P8W9 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Gm5312-201ENSMUST00000203728 547 ntBASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC15.64■□□□□ 0.09
Hmgb4Q6P8W9 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms