Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Gm16215-201ENSMUST00000161990 637 ntBASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Gm6756-201ENSMUST00000180647 1620 ntBASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Upf3aQ3ULJ3 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Shd-206ENSMUST00000225145 998 ntBASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 AC090659.2-201ENSMUST00000225378 1186 ntBASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3aQ3ULJ3 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Gm44855-201ENSMUST00000205725 362 ntBASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3aQ3ULJ3 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3aQ3ULJ3 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3aQ3ULJ3 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3aQ3ULJ3 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC15.64■□□□□ 0.09
Upf3aQ3ULJ3 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC15.64■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 62 ms