Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
Limch1Q3UH68 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Limch1Q3UH68 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Limch1Q3UH68 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC17.58■□□□□ 0.4
Limch1Q3UH68 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
Limch1Q3UH68 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC17.58■□□□□ 0.4
Limch1Q3UH68 Gm9682-201ENSMUST00000197505 556 ntBASIC17.58■□□□□ 0.4
Limch1Q3UH68 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Limch1Q3UH68 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Limch1Q3UH68 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Limch1Q3UH68 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Limch1Q3UH68 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Limch1Q3UH68 Gm38318-201ENSMUST00000195769 1706 ntBASIC17.58■□□□□ 0.4
Limch1Q3UH68 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Limch1Q3UH68 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Limch1Q3UH68 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Limch1Q3UH68 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Limch1Q3UH68 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Limch1Q3UH68 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Limch1Q3UH68 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Limch1Q3UH68 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Limch1Q3UH68 Gm11960-202ENSMUST00000181063 2858 ntBASIC17.57■□□□□ 0.4
Limch1Q3UH68 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Limch1Q3UH68 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Limch1Q3UH68 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC17.57■□□□□ 0.4
Limch1Q3UH68 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC17.57■□□□□ 0.4
Limch1Q3UH68 Gm27300-201ENSMUST00000184085 97 ntBASIC17.57■□□□□ 0.4
Limch1Q3UH68 Gm27335-201ENSMUST00000184758 97 ntBASIC17.57■□□□□ 0.4
Limch1Q3UH68 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Limch1Q3UH68 Chchd1-203ENSMUST00000224633 557 ntBASIC17.57■□□□□ 0.4
Limch1Q3UH68 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Limch1Q3UH68 AC154231.1-201ENSMUST00000220564 2175 ntBASIC17.57■□□□□ 0.4
Limch1Q3UH68 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Limch1Q3UH68 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Limch1Q3UH68 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Limch1Q3UH68 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Limch1Q3UH68 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Limch1Q3UH68 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Limch1Q3UH68 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Limch1Q3UH68 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC17.56■□□□□ 0.4
Limch1Q3UH68 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Limch1Q3UH68 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Limch1Q3UH68 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Limch1Q3UH68 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Limch1Q3UH68 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC17.56■□□□□ 0.4
Limch1Q3UH68 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Limch1Q3UH68 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC17.56■□□□□ 0.4
Limch1Q3UH68 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC17.56■□□□□ 0.4
Limch1Q3UH68 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
Limch1Q3UH68 Gm4899-201ENSMUST00000178708 719 ntBASIC17.56■□□□□ 0.4
Limch1Q3UH68 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC17.56■□□□□ 0.4
Limch1Q3UH68 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Limch1Q3UH68 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Limch1Q3UH68 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Limch1Q3UH68 Gm43195-201ENSMUST00000200614 2332 ntBASIC17.56■□□□□ 0.4
Limch1Q3UH68 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Limch1Q3UH68 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Limch1Q3UH68 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Limch1Q3UH68 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Limch1Q3UH68 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Limch1Q3UH68 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Limch1Q3UH68 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Limch1Q3UH68 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Limch1Q3UH68 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Limch1Q3UH68 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Limch1Q3UH68 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Limch1Q3UH68 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Limch1Q3UH68 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Limch1Q3UH68 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC17.55■□□□□ 0.4
Limch1Q3UH68 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Limch1Q3UH68 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Limch1Q3UH68 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Limch1Q3UH68 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Limch1Q3UH68 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Limch1Q3UH68 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Limch1Q3UH68 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Limch1Q3UH68 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC17.55■□□□□ 0.4
Limch1Q3UH68 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Limch1Q3UH68 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Limch1Q3UH68 Gm5421-201ENSMUST00000181698 2354 ntBASIC17.55■□□□□ 0.4
Limch1Q3UH68 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Limch1Q3UH68 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Limch1Q3UH68 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Limch1Q3UH68 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Limch1Q3UH68 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Limch1Q3UH68 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC17.55■□□□□ 0.4
Limch1Q3UH68 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Limch1Q3UH68 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Limch1Q3UH68 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Limch1Q3UH68 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
Limch1Q3UH68 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Limch1Q3UH68 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Limch1Q3UH68 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Limch1Q3UH68 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Limch1Q3UH68 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Limch1Q3UH68 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Limch1Q3UH68 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Limch1Q3UH68 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Limch1Q3UH68 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Limch1Q3UH68 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms