Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 AC131068.2-201ENSMUST00000226175 1453 ntBASIC18.84■□□□□ 0.61
Ddb1Q3U1J4 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
Ddb1Q3U1J4 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC18.84■□□□□ 0.61
Ddb1Q3U1J4 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC18.84■□□□□ 0.61
Ddb1Q3U1J4 AC114008.2-201ENSMUST00000227699 1347 ntBASIC18.84■□□□□ 0.61
Ddb1Q3U1J4 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC18.84■□□□□ 0.61
Ddb1Q3U1J4 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddb1Q3U1J4 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC18.84■□□□□ 0.61
Ddb1Q3U1J4 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddb1Q3U1J4 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddb1Q3U1J4 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Ddb1Q3U1J4 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC18.83■□□□□ 0.61
Ddb1Q3U1J4 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ddb1Q3U1J4 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC18.83■□□□□ 0.61
Ddb1Q3U1J4 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ddb1Q3U1J4 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ddb1Q3U1J4 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ddb1Q3U1J4 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ddb1Q3U1J4 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ddb1Q3U1J4 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ddb1Q3U1J4 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddb1Q3U1J4 Gm15678-201ENSMUST00000117573 960 ntBASIC18.83■□□□□ 0.6
Ddb1Q3U1J4 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC18.83■□□□□ 0.6
Ddb1Q3U1J4 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC18.83■□□□□ 0.6
Ddb1Q3U1J4 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddb1Q3U1J4 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddb1Q3U1J4 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddb1Q3U1J4 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddb1Q3U1J4 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC18.83■□□□□ 0.6
Ddb1Q3U1J4 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Ddb1Q3U1J4 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddb1Q3U1J4 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddb1Q3U1J4 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddb1Q3U1J4 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddb1Q3U1J4 AC153526.5-201ENSMUST00000218661 2147 ntBASIC18.82■□□□□ 0.6
Ddb1Q3U1J4 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddb1Q3U1J4 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddb1Q3U1J4 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ddb1Q3U1J4 Gm12585-201ENSMUST00000117307 290 ntBASIC18.82■□□□□ 0.6
Ddb1Q3U1J4 Gm45841-201ENSMUST00000207700 164 ntBASIC18.82■□□□□ 0.6
Ddb1Q3U1J4 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Ddb1Q3U1J4 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddb1Q3U1J4 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddb1Q3U1J4 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddb1Q3U1J4 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddb1Q3U1J4 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddb1Q3U1J4 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Ddb1Q3U1J4 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddb1Q3U1J4 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC18.81■□□□□ 0.6
Ddb1Q3U1J4 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Ddb1Q3U1J4 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddb1Q3U1J4 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddb1Q3U1J4 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddb1Q3U1J4 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Ddb1Q3U1J4 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC18.81■□□□□ 0.6
Ddb1Q3U1J4 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC18.81■□□□□ 0.6
Ddb1Q3U1J4 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC18.81■□□□□ 0.6
Ddb1Q3U1J4 Gm5354-201ENSMUST00000182417 973 ntBASIC18.81■□□□□ 0.6
Ddb1Q3U1J4 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Ddb1Q3U1J4 AC150560.1-201ENSMUST00000227731 1187 ntBASIC18.81■□□□□ 0.6
Ddb1Q3U1J4 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Ddb1Q3U1J4 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddb1Q3U1J4 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddb1Q3U1J4 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Ddb1Q3U1J4 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddb1Q3U1J4 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddb1Q3U1J4 Gm45751-201ENSMUST00000210185 1573 ntBASIC18.81■□□□□ 0.6
Ddb1Q3U1J4 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Ddb1Q3U1J4 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddb1Q3U1J4 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC18.8■□□□□ 0.6
Ddb1Q3U1J4 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddb1Q3U1J4 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Ddb1Q3U1J4 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddb1Q3U1J4 Gm12341-201ENSMUST00000119724 503 ntBASIC18.8■□□□□ 0.6
Ddb1Q3U1J4 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Ddb1Q3U1J4 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddb1Q3U1J4 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC18.8■□□□□ 0.6
Ddb1Q3U1J4 Gm6916-202ENSMUST00000205523 195 ntBASIC18.8■□□□□ 0.6
Ddb1Q3U1J4 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddb1Q3U1J4 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddb1Q3U1J4 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Ddb1Q3U1J4 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddb1Q3U1J4 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddb1Q3U1J4 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC18.8■□□□□ 0.6
Ddb1Q3U1J4 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddb1Q3U1J4 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC18.8■□□□□ 0.6
Ddb1Q3U1J4 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddb1Q3U1J4 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddb1Q3U1J4 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Gm12957-201ENSMUST00000117835 377 ntBASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Gm5303-201ENSMUST00000117943 1252 ntBASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 42.2 ms