Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Shmt1P50431 Mxra8os-201ENSMUST00000097740 687 ntBASIC15.79■□□□□ 0.12
Shmt1P50431 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Shmt1P50431 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Shmt1P50431 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Shmt1P50431 AC126250.1-201ENSMUST00000228343 1768 ntBASIC15.79■□□□□ 0.12
Shmt1P50431 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Shmt1P50431 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Shmt1P50431 Gm8096-201ENSMUST00000209921 1591 ntBASIC15.79■□□□□ 0.12
Shmt1P50431 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Shmt1P50431 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Shmt1P50431 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Shmt1P50431 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Shmt1P50431 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Shmt1P50431 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Shmt1P50431 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Shmt1P50431 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Shmt1P50431 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC15.78■□□□□ 0.12
Shmt1P50431 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Shmt1P50431 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Shmt1P50431 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Shmt1P50431 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Shmt1P50431 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC15.78■□□□□ 0.12
Shmt1P50431 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC15.78■□□□□ 0.12
Shmt1P50431 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC15.78■□□□□ 0.12
Shmt1P50431 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
Shmt1P50431 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC15.78■□□□□ 0.12
Shmt1P50431 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Shmt1P50431 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC15.78■□□□□ 0.12
Shmt1P50431 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Shmt1P50431 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Shmt1P50431 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Shmt1P50431 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Shmt1P50431 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Shmt1P50431 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Shmt1P50431 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Shmt1P50431 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Shmt1P50431 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Shmt1P50431 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC15.78■□□□□ 0.12
Shmt1P50431 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Shmt1P50431 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Shmt1P50431 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Shmt1P50431 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Shmt1P50431 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC15.78■□□□□ 0.12
Shmt1P50431 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Shmt1P50431 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Shmt1P50431 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
Shmt1P50431 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Shmt1P50431 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Shmt1P50431 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
Shmt1P50431 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Shmt1P50431 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Shmt1P50431 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
Shmt1P50431 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Shmt1P50431 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Shmt1P50431 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
Shmt1P50431 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
Shmt1P50431 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
Shmt1P50431 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Shmt1P50431 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC15.77■□□□□ 0.12
Shmt1P50431 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Shmt1P50431 Gm44335-201ENSMUST00000196879 141 ntBASIC15.77■□□□□ 0.12
Shmt1P50431 Gm44297-201ENSMUST00000198304 141 ntBASIC15.77■□□□□ 0.12
Shmt1P50431 Gm44346-201ENSMUST00000198851 141 ntBASIC15.77■□□□□ 0.12
Shmt1P50431 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC15.77■□□□□ 0.12
Shmt1P50431 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Shmt1P50431 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Shmt1P50431 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Shmt1P50431 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Shmt1P50431 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Shmt1P50431 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Shmt1P50431 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Shmt1P50431 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Shmt1P50431 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Shmt1P50431 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Shmt1P50431 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Shmt1P50431 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Shmt1P50431 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Shmt1P50431 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Shmt1P50431 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Shmt1P50431 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
Shmt1P50431 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Shmt1P50431 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC15.76■□□□□ 0.11
Shmt1P50431 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Shmt1P50431 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Shmt1P50431 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Shmt1P50431 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Shmt1P50431 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC15.76■□□□□ 0.11
Shmt1P50431 Gm6973-201ENSMUST00000117080 721 ntBASIC15.76■□□□□ 0.11
Shmt1P50431 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC15.76■□□□□ 0.11
Shmt1P50431 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC15.76■□□□□ 0.11
Shmt1P50431 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Shmt1P50431 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Shmt1P50431 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC15.76■□□□□ 0.11
Shmt1P50431 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC15.76■□□□□ 0.11
Shmt1P50431 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Shmt1P50431 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Shmt1P50431 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Shmt1P50431 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Shmt1P50431 Tcf21-202ENSMUST00000218002 1788 ntBASIC15.76■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms