Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdx1P18111 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Cdx1P18111 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Cdx1P18111 Matn2-206ENSMUST00000228570 2798 ntBASIC12.1□□□□□ -0.47
Cdx1P18111 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdx1P18111 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdx1P18111 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC12.1□□□□□ -0.47
Cdx1P18111 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdx1P18111 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdx1P18111 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdx1P18111 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdx1P18111 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdx1P18111 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC12.09□□□□□ -0.47
Cdx1P18111 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC12.09□□□□□ -0.47
Cdx1P18111 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Cdx1P18111 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Birc2-201ENSMUST00000054878 378 ntBASIC12.09□□□□□ -0.47
Cdx1P18111 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC12.09□□□□□ -0.47
Cdx1P18111 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Cdx1P18111 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
Cdx1P18111 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
Cdx1P18111 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Cdx1P18111 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
Cdx1P18111 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC12.08□□□□□ -0.47
Cdx1P18111 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
Cdx1P18111 Gm43570-201ENSMUST00000199951 3688 ntBASIC12.08□□□□□ -0.48
Cdx1P18111 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Cdx1P18111 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Cdx1P18111 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Cdx1P18111 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Cdx1P18111 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Cdx1P18111 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Cdx1P18111 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Cdx1P18111 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Cdx1P18111 Gm11336-201ENSMUST00000118168 334 ntBASIC12.08□□□□□ -0.48
Cdx1P18111 Gm15794-201ENSMUST00000120182 631 ntBASIC12.08□□□□□ -0.48
Cdx1P18111 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC12.08□□□□□ -0.48
Cdx1P18111 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC12.08□□□□□ -0.48
Cdx1P18111 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC12.08□□□□□ -0.48
Cdx1P18111 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Cdx1P18111 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Cdx1P18111 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Cdx1P18111 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Cdx1P18111 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Cdx1P18111 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Cdx1P18111 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Cdx1P18111 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Cdx1P18111 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Cdx1P18111 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdx1P18111 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdx1P18111 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdx1P18111 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdx1P18111 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdx1P18111 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdx1P18111 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdx1P18111 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdx1P18111 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdx1P18111 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdx1P18111 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdx1P18111 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Cdx1P18111 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdx1P18111 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdx1P18111 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdx1P18111 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Cdx1P18111 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC12.07□□□□□ -0.48
Cdx1P18111 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Cdx1P18111 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdx1P18111 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdx1P18111 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Cdx1P18111 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Cdx1P18111 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms