Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chmp6P0C0A3 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chmp6P0C0A3 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC16.3■□□□□ 0.2
Chmp6P0C0A3 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC16.3■□□□□ 0.2
Chmp6P0C0A3 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chmp6P0C0A3 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chmp6P0C0A3 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chmp6P0C0A3 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chmp6P0C0A3 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Gm38318-201ENSMUST00000195769 1706 ntBASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Gm5184-201ENSMUST00000220417 1702 ntBASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Gm27525-201ENSMUST00000184465 107 ntBASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 AC084391.1-201ENSMUST00000200651 141 ntBASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Gm45133-201ENSMUST00000207548 2773 ntBASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Chmp6P0C0A3 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chmp6P0C0A3 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chmp6P0C0A3 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chmp6P0C0A3 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC16.28■□□□□ 0.2
Chmp6P0C0A3 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Chmp6P0C0A3 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Chmp6P0C0A3 Gm11873-201ENSMUST00000117877 1304 ntBASIC16.28■□□□□ 0.2
Chmp6P0C0A3 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Chmp6P0C0A3 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chmp6P0C0A3 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Chmp6P0C0A3 Gm27300-201ENSMUST00000184085 97 ntBASIC16.28■□□□□ 0.2
Chmp6P0C0A3 Gm27335-201ENSMUST00000184758 97 ntBASIC16.28■□□□□ 0.2
Chmp6P0C0A3 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC16.28■□□□□ 0.2
Chmp6P0C0A3 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC16.28■□□□□ 0.2
Chmp6P0C0A3 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Chmp6P0C0A3 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Chmp6P0C0A3 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chmp6P0C0A3 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chmp6P0C0A3 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC16.28■□□□□ 0.2
Chmp6P0C0A3 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chmp6P0C0A3 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chmp6P0C0A3 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chmp6P0C0A3 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Gm37305-201ENSMUST00000195714 4279 ntBASIC16.27■□□□□ 0.2
Chmp6P0C0A3 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Chmp6P0C0A3 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC16.27■□□□□ 0.19
Chmp6P0C0A3 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Chmp6P0C0A3 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Chmp6P0C0A3 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Chmp6P0C0A3 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Chmp6P0C0A3 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Chmp6P0C0A3 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Chmp6P0C0A3 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Chmp6P0C0A3 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 49 ms