Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC17.68■□□□□ 0.42
Col3a1P08121 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
Col3a1P08121 Gm3436-201ENSMUST00000179930 840 ntBASIC17.68■□□□□ 0.42
Col3a1P08121 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC17.68■□□□□ 0.42
Col3a1P08121 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col3a1P08121 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col3a1P08121 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC17.68■□□□□ 0.42
Col3a1P08121 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Col3a1P08121 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col3a1P08121 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col3a1P08121 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Col3a1P08121 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC17.67■□□□□ 0.42
Col3a1P08121 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col3a1P08121 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col3a1P08121 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col3a1P08121 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col3a1P08121 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col3a1P08121 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col3a1P08121 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col3a1P08121 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col3a1P08121 Gm4875-201ENSMUST00000118257 786 ntBASIC17.67■□□□□ 0.42
Col3a1P08121 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
Col3a1P08121 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC17.67■□□□□ 0.42
Col3a1P08121 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Col3a1P08121 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col3a1P08121 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col3a1P08121 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Col3a1P08121 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Col3a1P08121 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col3a1P08121 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col3a1P08121 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col3a1P08121 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col3a1P08121 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC17.66■□□□□ 0.42
Col3a1P08121 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col3a1P08121 BC001981-202ENSMUST00000191393 1545 ntBASIC17.66■□□□□ 0.42
Col3a1P08121 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col3a1P08121 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col3a1P08121 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Col3a1P08121 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col3a1P08121 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col3a1P08121 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col3a1P08121 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col3a1P08121 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col3a1P08121 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Col3a1P08121 Gm22189-201ENSMUST00000103822 86 ntBASIC17.66■□□□□ 0.42
Col3a1P08121 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col3a1P08121 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
Col3a1P08121 Gm10275-202ENSMUST00000168697 495 ntBASIC17.66■□□□□ 0.42
Col3a1P08121 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC17.66■□□□□ 0.42
Col3a1P08121 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC17.66■□□□□ 0.42
Col3a1P08121 Gm10275-201ENSMUST00000092620 635 ntBASIC17.66■□□□□ 0.42
Col3a1P08121 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col3a1P08121 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col3a1P08121 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col3a1P08121 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col3a1P08121 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col3a1P08121 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col3a1P08121 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col3a1P08121 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col3a1P08121 Gm7488-201ENSMUST00000117148 684 ntBASIC17.65■□□□□ 0.42
Col3a1P08121 Mir1897-201ENSMUST00000122581 272 ntBASIC17.65■□□□□ 0.42
Col3a1P08121 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Col3a1P08121 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col3a1P08121 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col3a1P08121 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col3a1P08121 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col3a1P08121 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Col3a1P08121 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col3a1P08121 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC17.65■□□□□ 0.42
Col3a1P08121 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col3a1P08121 Gm3365-201ENSMUST00000216296 1480 ntBASIC17.65■□□□□ 0.42
Col3a1P08121 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col3a1P08121 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col3a1P08121 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Col3a1P08121 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Col3a1P08121 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col3a1P08121 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col3a1P08121 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col3a1P08121 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col3a1P08121 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Col3a1P08121 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC17.64■□□□□ 0.42
Col3a1P08121 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Col3a1P08121 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Col3a1P08121 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col3a1P08121 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col3a1P08121 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col3a1P08121 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Col3a1P08121 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col3a1P08121 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col3a1P08121 Gm6263-201ENSMUST00000120029 1342 ntBASIC17.64■□□□□ 0.41
Col3a1P08121 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col3a1P08121 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col3a1P08121 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC17.64■□□□□ 0.41
Col3a1P08121 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col3a1P08121 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Col3a1P08121 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col3a1P08121 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Col3a1P08121 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC17.63■□□□□ 0.41
Col3a1P08121 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Col3a1P08121 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 50.4 ms