Protein–RNA interactions for Protein: O88384

Vti1b, Vesicle transport through interaction with t-SNAREs homolog 1B, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1bO88384 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vti1bO88384 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vti1bO88384 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vti1bO88384 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vti1bO88384 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vti1bO88384 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vti1bO88384 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vti1bO88384 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vti1bO88384 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Vti1bO88384 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Vti1bO88384 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
Vti1bO88384 Gm12620-201ENSMUST00000119791 1986 ntBASIC14.27□□□□□ -0.12
Vti1bO88384 Gm12612-201ENSMUST00000140182 1986 ntBASIC14.27□□□□□ -0.12
Vti1bO88384 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Vti1bO88384 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Vti1bO88384 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Vti1bO88384 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
Vti1bO88384 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Vti1bO88384 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Vti1bO88384 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Vti1bO88384 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC14.27□□□□□ -0.12
Vti1bO88384 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Vti1bO88384 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Vti1bO88384 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Vti1bO88384 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Vti1bO88384 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC14.27□□□□□ -0.13
Vti1bO88384 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC14.27□□□□□ -0.13
Vti1bO88384 Gm4535-201ENSMUST00000182274 558 ntBASIC14.27□□□□□ -0.13
Vti1bO88384 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Vti1bO88384 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC14.27□□□□□ -0.13
Vti1bO88384 Gm37584-201ENSMUST00000193595 1290 ntBASIC14.27□□□□□ -0.13
Vti1bO88384 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.13
Vti1bO88384 Gm6296-201ENSMUST00000222599 943 ntBASIC14.27□□□□□ -0.13
Vti1bO88384 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Vti1bO88384 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Vti1bO88384 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
Vti1bO88384 Gm10355-201ENSMUST00000097146 517 ntBASIC14.27□□□□□ -0.13
Vti1bO88384 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Vti1bO88384 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Vti1bO88384 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Vti1bO88384 Gm10605-202ENSMUST00000183019 3198 ntBASIC14.27□□□□□ -0.13
Vti1bO88384 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Vti1bO88384 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Vti1bO88384 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Vti1bO88384 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Vti1bO88384 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
Vti1bO88384 Sorbs3-204ENSMUST00000227929 2460 ntBASIC14.26□□□□□ -0.13
Vti1bO88384 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vti1bO88384 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Vti1bO88384 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC14.26□□□□□ -0.13
Vti1bO88384 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vti1bO88384 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Vti1bO88384 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vti1bO88384 Camk2g-217ENSMUST00000226630 1937 ntBASIC14.26□□□□□ -0.13
Vti1bO88384 Gm8344-201ENSMUST00000119813 856 ntBASIC14.26□□□□□ -0.13
Vti1bO88384 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC14.26□□□□□ -0.13
Vti1bO88384 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC14.26□□□□□ -0.13
Vti1bO88384 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vti1bO88384 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vti1bO88384 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vti1bO88384 Rps4l-201ENSMUST00000071745 943 ntBASIC14.26□□□□□ -0.13
Vti1bO88384 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vti1bO88384 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vti1bO88384 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vti1bO88384 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Vti1bO88384 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vti1bO88384 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Vti1bO88384 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
Vti1bO88384 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vti1bO88384 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vti1bO88384 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vti1bO88384 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vti1bO88384 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC14.26□□□□□ -0.13
Vti1bO88384 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vti1bO88384 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vti1bO88384 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vti1bO88384 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vti1bO88384 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC14.25□□□□□ -0.13
Vti1bO88384 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vti1bO88384 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vti1bO88384 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vti1bO88384 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vti1bO88384 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC14.25□□□□□ -0.13
Vti1bO88384 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vti1bO88384 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Vti1bO88384 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vti1bO88384 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC14.25□□□□□ -0.13
Vti1bO88384 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vti1bO88384 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
Vti1bO88384 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
Vti1bO88384 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC14.25□□□□□ -0.13
Vti1bO88384 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC14.25□□□□□ -0.13
Vti1bO88384 Gm11780-201ENSMUST00000136880 516 ntBASIC14.25□□□□□ -0.13
Vti1bO88384 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC14.25□□□□□ -0.13
Vti1bO88384 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vti1bO88384 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Vti1bO88384 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC14.25□□□□□ -0.13
Vti1bO88384 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC14.25□□□□□ -0.13
Vti1bO88384 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Vti1bO88384 Gm19164-201ENSMUST00000210667 640 ntBASIC14.25□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms