Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col5a1O88207 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
Col5a1O88207 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col5a1O88207 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col5a1O88207 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col5a1O88207 CT010478.1-201ENSMUST00000220747 2787 ntBASIC13.32□□□□□ -0.28
Col5a1O88207 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col5a1O88207 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col5a1O88207 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col5a1O88207 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col5a1O88207 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
Col5a1O88207 Gm4984-201ENSMUST00000115987 360 ntBASIC13.32□□□□□ -0.28
Col5a1O88207 Mir1247-201ENSMUST00000116706 82 ntBASIC13.32□□□□□ -0.28
Col5a1O88207 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
Col5a1O88207 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col5a1O88207 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC13.32□□□□□ -0.28
Col5a1O88207 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col5a1O88207 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col5a1O88207 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC13.32□□□□□ -0.28
Col5a1O88207 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC13.32□□□□□ -0.28
Col5a1O88207 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col5a1O88207 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col5a1O88207 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC13.31□□□□□ -0.28
Col5a1O88207 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col5a1O88207 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col5a1O88207 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col5a1O88207 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col5a1O88207 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col5a1O88207 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col5a1O88207 Gm26917-202ENSMUST00000192833 3329 ntBASIC13.31□□□□□ -0.28
Col5a1O88207 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC13.31□□□□□ -0.28
Col5a1O88207 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col5a1O88207 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col5a1O88207 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col5a1O88207 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col5a1O88207 Gm43195-201ENSMUST00000200614 2332 ntBASIC13.31□□□□□ -0.28
Col5a1O88207 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Col5a1O88207 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC13.31□□□□□ -0.28
Col5a1O88207 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC13.31□□□□□ -0.28
Col5a1O88207 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col5a1O88207 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Col5a1O88207 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col5a1O88207 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col5a1O88207 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC13.31□□□□□ -0.28
Col5a1O88207 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col5a1O88207 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Col5a1O88207 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col5a1O88207 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col5a1O88207 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col5a1O88207 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col5a1O88207 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC13.31□□□□□ -0.28
Col5a1O88207 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col5a1O88207 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col5a1O88207 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Col5a1O88207 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col5a1O88207 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col5a1O88207 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col5a1O88207 Gm13392-201ENSMUST00000117708 150 ntBASIC13.3□□□□□ -0.28
Col5a1O88207 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col5a1O88207 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC13.3□□□□□ -0.28
Col5a1O88207 Gm31326-201ENSMUST00000191856 1048 ntBASIC13.3□□□□□ -0.28
Col5a1O88207 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC13.3□□□□□ -0.28
Col5a1O88207 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col5a1O88207 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC13.3□□□□□ -0.28
Col5a1O88207 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC13.3□□□□□ -0.28
Col5a1O88207 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col5a1O88207 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col5a1O88207 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col5a1O88207 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col5a1O88207 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col5a1O88207 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col5a1O88207 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
Col5a1O88207 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC13.3□□□□□ -0.28
Col5a1O88207 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col5a1O88207 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col5a1O88207 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Col5a1O88207 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col5a1O88207 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC13.3□□□□□ -0.28
Col5a1O88207 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col5a1O88207 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Col5a1O88207 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col5a1O88207 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col5a1O88207 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col5a1O88207 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC13.3□□□□□ -0.28
Col5a1O88207 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Col5a1O88207 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC13.3□□□□□ -0.28
Col5a1O88207 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Col5a1O88207 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Col5a1O88207 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC13.29□□□□□ -0.28
Col5a1O88207 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC13.29□□□□□ -0.28
Col5a1O88207 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC13.29□□□□□ -0.28
Col5a1O88207 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col5a1O88207 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col5a1O88207 Gm9522-201ENSMUST00000182394 926 ntBASIC13.29□□□□□ -0.28
Col5a1O88207 Olfr286-202ENSMUST00000205305 969 ntBASIC13.29□□□□□ -0.28
Col5a1O88207 AC162801.1-201ENSMUST00000220612 198 ntBASIC13.29□□□□□ -0.28
Col5a1O88207 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col5a1O88207 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col5a1O88207 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col5a1O88207 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms