Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 Crybg3-201ENSMUST00000044604 5231 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC12.4□□□□□ -0.42
Hmgb3O54879 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC12.4□□□□□ -0.42
Hmgb3O54879 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hmgb3O54879 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hmgb3O54879 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hmgb3O54879 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hmgb3O54879 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hmgb3O54879 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Hmgb3O54879 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Hmgb3O54879 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hmgb3O54879 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hmgb3O54879 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hmgb3O54879 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hmgb3O54879 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hmgb3O54879 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hmgb3O54879 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC12.4□□□□□ -0.42
Hmgb3O54879 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC12.4□□□□□ -0.42
Hmgb3O54879 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC12.4□□□□□ -0.42
Hmgb3O54879 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hmgb3O54879 CT009713.7-201ENSMUST00000224689 571 ntBASIC12.4□□□□□ -0.42
Hmgb3O54879 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hmgb3O54879 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Hmgb3O54879 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hmgb3O54879 Gm14780-201ENSMUST00000118387 2737 ntBASIC12.4□□□□□ -0.42
Hmgb3O54879 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Hmgb3O54879 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hmgb3O54879 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hmgb3O54879 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hmgb3O54879 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.43
Hmgb3O54879 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.43
Hmgb3O54879 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC12.4□□□□□ -0.43
Hmgb3O54879 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hmgb3O54879 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hmgb3O54879 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC12.39□□□□□ -0.43
Hmgb3O54879 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Hmgb3O54879 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hmgb3O54879 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Hmgb3O54879 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Hmgb3O54879 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hmgb3O54879 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hmgb3O54879 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hmgb3O54879 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hmgb3O54879 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hmgb3O54879 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC12.39□□□□□ -0.43
Hmgb3O54879 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hmgb3O54879 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hmgb3O54879 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Hmgb3O54879 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Hmgb3O54879 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hmgb3O54879 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Hmgb3O54879 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC12.39□□□□□ -0.43
Hmgb3O54879 Gm44430-201ENSMUST00000203376 995 ntBASIC12.39□□□□□ -0.43
Hmgb3O54879 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hmgb3O54879 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Hmgb3O54879 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hmgb3O54879 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC12.39□□□□□ -0.43
Hmgb3O54879 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC12.39□□□□□ -0.43
Hmgb3O54879 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
Hmgb3O54879 Gm12620-201ENSMUST00000119791 1986 ntBASIC12.39□□□□□ -0.43
Hmgb3O54879 Gm12612-201ENSMUST00000140182 1986 ntBASIC12.39□□□□□ -0.43
Hmgb3O54879 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Hmgb3O54879 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Hmgb3O54879 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hmgb3O54879 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hmgb3O54879 Gramd1b-201ENSMUST00000045682 7488 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hmgb3O54879 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hmgb3O54879 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Hmgb3O54879 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hmgb3O54879 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hmgb3O54879 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Hmgb3O54879 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Hmgb3O54879 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hmgb3O54879 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hmgb3O54879 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hmgb3O54879 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC12.38□□□□□ -0.43
Hmgb3O54879 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Hmgb3O54879 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Hmgb3O54879 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hmgb3O54879 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Hmgb3O54879 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hmgb3O54879 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Hmgb3O54879 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hmgb3O54879 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC12.38□□□□□ -0.43
Hmgb3O54879 Gm30025-201ENSMUST00000218555 728 ntBASIC12.38□□□□□ -0.43
Hmgb3O54879 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC12.38□□□□□ -0.43
Hmgb3O54879 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hmgb3O54879 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Hmgb3O54879 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hmgb3O54879 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC12.38□□□□□ -0.43
Hmgb3O54879 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Hmgb3O54879 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hmgb3O54879 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 66.7 ms