Protein–RNA interactions for Protein: O35235

Tnfsf11, Tumor necrosis factor ligand superfamily member 11, mousemouse

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf11O35235 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Tnfsf11O35235 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Gm22697-201ENSMUST00000175194 63 ntBASIC11.68□□□□□ -0.54
Tnfsf11O35235 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC11.68□□□□□ -0.54
Tnfsf11O35235 AC160980.1-201ENSMUST00000224136 970 ntBASIC11.68□□□□□ -0.54
Tnfsf11O35235 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Tnfsf11O35235 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Tnfsf11O35235 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 AC166574.6-201ENSMUST00000227889 1806 ntBASIC11.67□□□□□ -0.54
Tnfsf11O35235 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Gm11860-201ENSMUST00000122346 1010 ntBASIC11.67□□□□□ -0.54
Tnfsf11O35235 Gm25406-201ENSMUST00000157599 105 ntBASIC11.67□□□□□ -0.54
Tnfsf11O35235 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Gm7556-201ENSMUST00000201178 1084 ntBASIC11.67□□□□□ -0.54
Tnfsf11O35235 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC11.67□□□□□ -0.54
Tnfsf11O35235 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC11.67□□□□□ -0.54
Tnfsf11O35235 AC125350.1-201ENSMUST00000225115 903 ntBASIC11.67□□□□□ -0.54
Tnfsf11O35235 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC11.67□□□□□ -0.54
Tnfsf11O35235 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC11.66□□□□□ -0.54
Tnfsf11O35235 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
Tnfsf11O35235 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 54.9 ms