Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 Gm11960-202ENSMUST00000181063 2858 ntBASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 Gm28819-201ENSMUST00000186691 572 ntTSL 5 BASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 Gm28840-208ENSMUST00000191514 738 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 Gm37728-201ENSMUST00000195025 2292 ntBASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Prpf40aQ9R1C7 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Gm27628-201ENSMUST00000184911 107 ntBASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Gm15823-201ENSMUST00000064305 670 ntBASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
Prpf40aQ9R1C7 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 Best4-ps-201ENSMUST00000129783 1380 ntBASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC16.46■□□□□ 0.23
Prpf40aQ9R1C7 Gm37736-201ENSMUST00000193564 2802 ntBASIC16.46■□□□□ 0.22
Prpf40aQ9R1C7 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
Prpf40aQ9R1C7 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Prpf40aQ9R1C7 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Prpf40aQ9R1C7 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Prpf40aQ9R1C7 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Prpf40aQ9R1C7 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Prpf40aQ9R1C7 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Prpf40aQ9R1C7 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC16.45■□□□□ 0.22
Prpf40aQ9R1C7 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Prpf40aQ9R1C7 Gm5357-201ENSMUST00000212720 1924 ntBASIC16.45■□□□□ 0.22
Prpf40aQ9R1C7 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Prpf40aQ9R1C7 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC16.45■□□□□ 0.22
Prpf40aQ9R1C7 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Prpf40aQ9R1C7 Gm30437-201ENSMUST00000206086 1201 ntBASIC16.45■□□□□ 0.22
Prpf40aQ9R1C7 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Prpf40aQ9R1C7 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Prpf40aQ9R1C7 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC16.45■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms