Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Mir7023-201ENSMUST00000185093 64 ntBASIC16.21■□□□□ 0.19
Trim54Q9ERP3 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC16.21■□□□□ 0.19
Trim54Q9ERP3 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim54Q9ERP3 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC16.21■□□□□ 0.19
Trim54Q9ERP3 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim54Q9ERP3 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trim54Q9ERP3 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC16.21■□□□□ 0.19
Trim54Q9ERP3 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim54Q9ERP3 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Trim54Q9ERP3 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Trim54Q9ERP3 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim54Q9ERP3 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim54Q9ERP3 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trim54Q9ERP3 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim54Q9ERP3 Gm7336-201ENSMUST00000107041 1232 ntBASIC16.2■□□□□ 0.18
Trim54Q9ERP3 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trim54Q9ERP3 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim54Q9ERP3 Gm11543-201ENSMUST00000120758 370 ntBASIC16.2■□□□□ 0.18
Trim54Q9ERP3 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trim54Q9ERP3 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC16.2■□□□□ 0.18
Trim54Q9ERP3 Gm27321-201ENSMUST00000185021 205 ntBASIC16.2■□□□□ 0.18
Trim54Q9ERP3 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim54Q9ERP3 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Trim54Q9ERP3 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim54Q9ERP3 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Trim54Q9ERP3 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim54Q9ERP3 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Trim54Q9ERP3 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim54Q9ERP3 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim54Q9ERP3 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC16.2■□□□□ 0.18
Trim54Q9ERP3 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim54Q9ERP3 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim54Q9ERP3 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim54Q9ERP3 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Gm8096-201ENSMUST00000209921 1591 ntBASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Gm2810-201ENSMUST00000118681 990 ntBASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim54Q9ERP3 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim54Q9ERP3 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trim54Q9ERP3 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC16.17■□□□□ 0.18
Trim54Q9ERP3 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trim54Q9ERP3 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim54Q9ERP3 Gm13127-201ENSMUST00000118978 1389 ntBASIC16.17■□□□□ 0.18
Trim54Q9ERP3 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms