Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim9Q8C7M3 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim9Q8C7M3 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim9Q8C7M3 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim9Q8C7M3 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim9Q8C7M3 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
Trim9Q8C7M3 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Gm14140-201ENSMUST00000119999 995 ntBASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Gm15593-201ENSMUST00000122085 1008 ntBASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim9Q8C7M3 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 Psmb5-202ENSMUST00000227257 622 ntBASIC16.5■□□□□ 0.23
Trim9Q8C7M3 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim9Q8C7M3 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim9Q8C7M3 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim9Q8C7M3 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC16.48■□□□□ 0.23
Trim9Q8C7M3 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim9Q8C7M3 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trim9Q8C7M3 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim9Q8C7M3 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim9Q8C7M3 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim9Q8C7M3 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms