Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC19.36■□□□□ 0.69
Trim28Q62318 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim28Q62318 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC19.36■□□□□ 0.69
Trim28Q62318 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim28Q62318 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC19.36■□□□□ 0.69
Trim28Q62318 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC19.36■□□□□ 0.69
Trim28Q62318 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Trim28Q62318 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim28Q62318 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim28Q62318 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim28Q62318 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim28Q62318 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim28Q62318 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim28Q62318 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim28Q62318 Gm7775-201ENSMUST00000218871 853 ntBASIC19.35■□□□□ 0.69
Trim28Q62318 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Trim28Q62318 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim28Q62318 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC19.35■□□□□ 0.69
Trim28Q62318 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim28Q62318 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim28Q62318 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
Trim28Q62318 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim28Q62318 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim28Q62318 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Trim28Q62318 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim28Q62318 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim28Q62318 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim28Q62318 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Trim28Q62318 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim28Q62318 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Trim28Q62318 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim28Q62318 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Trim28Q62318 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC19.34■□□□□ 0.69
Trim28Q62318 Gm27321-201ENSMUST00000185021 205 ntBASIC19.34■□□□□ 0.69
Trim28Q62318 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim28Q62318 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC19.34■□□□□ 0.69
Trim28Q62318 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim28Q62318 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim28Q62318 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim28Q62318 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC19.34■□□□□ 0.69
Trim28Q62318 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Trim28Q62318 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim28Q62318 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Trim28Q62318 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim28Q62318 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim28Q62318 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim28Q62318 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
Trim28Q62318 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim28Q62318 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim28Q62318 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim28Q62318 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim28Q62318 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim28Q62318 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim28Q62318 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Trim28Q62318 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Trim28Q62318 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC19.33■□□□□ 0.68
Trim28Q62318 Gm27989-201ENSMUST00000184721 107 ntBASIC19.33■□□□□ 0.68
Trim28Q62318 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Trim28Q62318 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC19.33■□□□□ 0.68
Trim28Q62318 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim28Q62318 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim28Q62318 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Trim28Q62318 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC19.33■□□□□ 0.68
Trim28Q62318 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim28Q62318 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim28Q62318 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim28Q62318 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim28Q62318 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Trim28Q62318 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Trim28Q62318 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Trim28Q62318 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim28Q62318 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim28Q62318 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim28Q62318 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim28Q62318 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim28Q62318 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
Trim28Q62318 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim28Q62318 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim28Q62318 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC19.32■□□□□ 0.68
Trim28Q62318 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim28Q62318 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim28Q62318 Gm24543-201ENSMUST00000103867 82 ntBASIC19.32■□□□□ 0.68
Trim28Q62318 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC19.32■□□□□ 0.68
Trim28Q62318 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim28Q62318 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim28Q62318 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim28Q62318 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim28Q62318 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC19.32■□□□□ 0.68
Trim28Q62318 Gm9182-201ENSMUST00000217829 639 ntBASIC19.32■□□□□ 0.68
Trim28Q62318 Shd-206ENSMUST00000225145 998 ntBASIC19.32■□□□□ 0.68
Trim28Q62318 Wdyhv1-203ENSMUST00000226889 394 ntBASIC19.32■□□□□ 0.68
Trim28Q62318 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim28Q62318 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim28Q62318 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
Trim28Q62318 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim28Q62318 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim28Q62318 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim28Q62318 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim28Q62318 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim28Q62318 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms