Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 Gm8242-201ENSMUST00000193029 1420 ntBASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 Gm5566-201ENSMUST00000116118 459 ntBASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 Gm5479-201ENSMUST00000160578 435 ntBASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 AC132863.2-201ENSMUST00000226643 799 ntBASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Upf3aQ3ULJ3 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Upf3aQ3ULJ3 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Upf3aQ3ULJ3 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Upf3aQ3ULJ3 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC15.71■□□□□ 0.1
Upf3aQ3ULJ3 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Gm7488-201ENSMUST00000117148 684 ntBASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Gm9719-201ENSMUST00000162765 543 ntBASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3aQ3ULJ3 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3aQ3ULJ3 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3aQ3ULJ3 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3aQ3ULJ3 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3aQ3ULJ3 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3aQ3ULJ3 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3aQ3ULJ3 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3aQ3ULJ3 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3aQ3ULJ3 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3aQ3ULJ3 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Upf3aQ3ULJ3 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC15.69■□□□□ 0.1
Upf3aQ3ULJ3 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
Upf3aQ3ULJ3 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3aQ3ULJ3 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3aQ3ULJ3 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3aQ3ULJ3 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3aQ3ULJ3 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Upf3aQ3ULJ3 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3aQ3ULJ3 Syt7-204ENSMUST00000223586 1344 ntBASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Gm24543-201ENSMUST00000103867 82 ntBASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Gm27838-201ENSMUST00000184829 128 ntBASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Gtpbp10-211ENSMUST00000198799 648 ntBASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3aQ3ULJ3 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms