Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Gm43205-201ENSMUST00000198622 1968 ntBASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Gm1818-201ENSMUST00000169406 1184 ntBASIC14.55□□□□□ -0.08
Col28a1Q2UY11 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Gm5712-201ENSMUST00000199748 1043 ntBASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Col28a1Q2UY11 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Gm8349-201ENSMUST00000182720 1003 ntBASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Gm9449-201ENSMUST00000207265 1011 ntBASIC14.54□□□□□ -0.08
Col28a1Q2UY11 AC108846.1-201ENSMUST00000214531 513 ntBASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Gm44291-201ENSMUST00000203102 2865 ntBASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col28a1Q2UY11 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Gm2651-201ENSMUST00000203560 838 ntBASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 AC132104.2-201ENSMUST00000215011 266 ntBASIC14.53□□□□□ -0.08
Col28a1Q2UY11 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Gm43399-201ENSMUST00000202546 2374 ntBASIC14.53□□□□□ -0.08
Col28a1Q2UY11 AC162938.1-201ENSMUST00000213140 2323 ntBASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Col28a1Q2UY11 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
Col28a1Q2UY11 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC14.52□□□□□ -0.08
Col28a1Q2UY11 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col28a1Q2UY11 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Col28a1Q2UY11 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col28a1Q2UY11 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col28a1Q2UY11 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col28a1Q2UY11 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
Col28a1Q2UY11 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms