Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb1P63158 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb1P63158 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Hmgb1P63158 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb1P63158 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb1P63158 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb1P63158 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb1P63158 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb1P63158 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Hmgb1P63158 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb1P63158 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb1P63158 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC16.48■□□□□ 0.23
Hmgb1P63158 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Hmgb1P63158 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC16.48■□□□□ 0.23
Hmgb1P63158 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Hmgb1P63158 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb1P63158 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb1P63158 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb1P63158 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Hmgb1P63158 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb1P63158 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb1P63158 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC16.48■□□□□ 0.23
Hmgb1P63158 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb1P63158 Gm18856-201ENSMUST00000178096 1374 ntBASIC16.48■□□□□ 0.23
Hmgb1P63158 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb1P63158 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb1P63158 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb1P63158 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Hmgb1P63158 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Hmgb1P63158 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Hmgb1P63158 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Hmgb1P63158 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Hmgb1P63158 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Hmgb1P63158 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Hmgb1P63158 Sgk1-213ENSMUST00000164659 2602 ntTSL 5 BASIC16.47■□□□□ 0.23
Hmgb1P63158 Gm9103-201ENSMUST00000119371 405 ntBASIC16.47■□□□□ 0.23
Hmgb1P63158 Gm11764-201ENSMUST00000120221 623 ntBASIC16.47■□□□□ 0.23
Hmgb1P63158 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC16.47■□□□□ 0.23
Hmgb1P63158 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC16.47■□□□□ 0.23
Hmgb1P63158 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Hmgb1P63158 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Hmgb1P63158 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Hmgb1P63158 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Hmgb1P63158 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Hmgb1P63158 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Hmgb1P63158 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Hmgb1P63158 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Hmgb1P63158 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Hmgb1P63158 Fbxl12-205ENSMUST00000140702 1555 ntBASIC16.47■□□□□ 0.23
Hmgb1P63158 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Hmgb1P63158 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Hmgb1P63158 Gm21009-201ENSMUST00000197169 1669 ntBASIC16.46■□□□□ 0.23
Hmgb1P63158 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Hmgb1P63158 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC16.46■□□□□ 0.23
Hmgb1P63158 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Hmgb1P63158 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC16.46■□□□□ 0.23
Hmgb1P63158 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Hmgb1P63158 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC16.46■□□□□ 0.23
Hmgb1P63158 Neurod6-201ENSMUST00000044767 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Hmgb1P63158 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Hmgb1P63158 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Hmgb1P63158 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
Hmgb1P63158 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Hmgb1P63158 Gm5682-201ENSMUST00000173402 505 ntBASIC16.46■□□□□ 0.23
Hmgb1P63158 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC16.46■□□□□ 0.23
Hmgb1P63158 Gm7787-201ENSMUST00000216858 688 ntBASIC16.46■□□□□ 0.23
Hmgb1P63158 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC16.46■□□□□ 0.23
Hmgb1P63158 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Hmgb1P63158 Rps4l-201ENSMUST00000071745 943 ntBASIC16.46■□□□□ 0.23
Hmgb1P63158 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Hmgb1P63158 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC16.46■□□□□ 0.23
Hmgb1P63158 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC16.46■□□□□ 0.23
Hmgb1P63158 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Hmgb1P63158 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Hmgb1P63158 Gm45133-201ENSMUST00000207548 2773 ntBASIC16.46■□□□□ 0.23
Hmgb1P63158 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Hmgb1P63158 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Hmgb1P63158 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC16.46■□□□□ 0.23
Hmgb1P63158 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Hmgb1P63158 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Hmgb1P63158 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Hmgb1P63158 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
Hmgb1P63158 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.22
Hmgb1P63158 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb1P63158 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb1P63158 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb1P63158 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Hmgb1P63158 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb1P63158 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb1P63158 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Hmgb1P63158 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC16.45■□□□□ 0.22
Hmgb1P63158 Gm12134-201ENSMUST00000122109 520 ntBASIC16.45■□□□□ 0.22
Hmgb1P63158 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
Hmgb1P63158 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC16.45■□□□□ 0.22
Hmgb1P63158 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb1P63158 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC16.45■□□□□ 0.22
Hmgb1P63158 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb1P63158 Gm6376-201ENSMUST00000209407 580 ntBASIC16.45■□□□□ 0.22
Hmgb1P63158 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb1P63158 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms