Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 BC037039-201ENSMUST00000192003 2205 ntBASIC16.33■□□□□ 0.2
Chmp6P0C0A3 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 AC131709.1-201ENSMUST00000224731 1180 ntBASIC16.33■□□□□ 0.2
Chmp6P0C0A3 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC16.33■□□□□ 0.2
Chmp6P0C0A3 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Gm14140-201ENSMUST00000119999 995 ntBASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Gm12260-201ENSMUST00000122447 411 ntBASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Best4-ps-201ENSMUST00000129783 1380 ntBASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Gm10499-201ENSMUST00000174094 934 ntBASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chmp6P0C0A3 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Gm38058-201ENSMUST00000194323 4368 ntBASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chmp6P0C0A3 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chmp6P0C0A3 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chmp6P0C0A3 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Chmp6P0C0A3 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chmp6P0C0A3 AC157650.3-201ENSMUST00000225058 1476 ntBASIC16.3■□□□□ 0.2
Chmp6P0C0A3 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC16.3■□□□□ 0.2
Chmp6P0C0A3 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chmp6P0C0A3 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chmp6P0C0A3 Tfap2a-203ENSMUST00000223869 2037 ntBASIC16.3■□□□□ 0.2
Chmp6P0C0A3 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chmp6P0C0A3 Gm10676-201ENSMUST00000098778 3221 ntBASIC16.3■□□□□ 0.2
Chmp6P0C0A3 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chmp6P0C0A3 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC16.3■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms