Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lmx1bO88609 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC13.58□□□□□ -0.24
Lmx1bO88609 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lmx1bO88609 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lmx1bO88609 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC13.58□□□□□ -0.24
Lmx1bO88609 Gm27494-201ENSMUST00000184735 189 ntBASIC13.58□□□□□ -0.24
Lmx1bO88609 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC13.58□□□□□ -0.24
Lmx1bO88609 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC13.58□□□□□ -0.24
Lmx1bO88609 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lmx1bO88609 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lmx1bO88609 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lmx1bO88609 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lmx1bO88609 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lmx1bO88609 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lmx1bO88609 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lmx1bO88609 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
Lmx1bO88609 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lmx1bO88609 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Lmx1bO88609 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lmx1bO88609 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lmx1bO88609 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lmx1bO88609 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lmx1bO88609 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lmx1bO88609 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
Lmx1bO88609 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Lmx1bO88609 Gm7901-201ENSMUST00000120430 1597 ntBASIC13.58□□□□□ -0.24
Lmx1bO88609 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lmx1bO88609 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lmx1bO88609 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lmx1bO88609 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lmx1bO88609 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC13.58□□□□□ -0.24
Lmx1bO88609 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lmx1bO88609 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC13.57□□□□□ -0.24
Lmx1bO88609 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC13.57□□□□□ -0.24
Lmx1bO88609 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Lmx1bO88609 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lmx1bO88609 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lmx1bO88609 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Lmx1bO88609 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lmx1bO88609 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lmx1bO88609 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lmx1bO88609 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
Lmx1bO88609 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lmx1bO88609 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lmx1bO88609 Gm16425-201ENSMUST00000118143 3130 ntBASIC13.57□□□□□ -0.24
Lmx1bO88609 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
Lmx1bO88609 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Lmx1bO88609 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Lmx1bO88609 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC13.57□□□□□ -0.24
Lmx1bO88609 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Lmx1bO88609 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC13.57□□□□□ -0.24
Lmx1bO88609 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lmx1bO88609 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC13.57□□□□□ -0.24
Lmx1bO88609 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lmx1bO88609 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC13.57□□□□□ -0.24
Lmx1bO88609 AC025913.2-201ENSMUST00000220136 1766 ntBASIC13.57□□□□□ -0.24
Lmx1bO88609 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lmx1bO88609 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lmx1bO88609 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lmx1bO88609 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lmx1bO88609 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Lmx1bO88609 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lmx1bO88609 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lmx1bO88609 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Lmx1bO88609 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lmx1bO88609 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
Lmx1bO88609 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Lmx1bO88609 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
Lmx1bO88609 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC13.56□□□□□ -0.24
Lmx1bO88609 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC13.56□□□□□ -0.24
Lmx1bO88609 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lmx1bO88609 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lmx1bO88609 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC13.56□□□□□ -0.24
Lmx1bO88609 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC13.56□□□□□ -0.24
Lmx1bO88609 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC13.56□□□□□ -0.24
Lmx1bO88609 Gm16198-201ENSMUST00000118766 670 ntBASIC13.56□□□□□ -0.24
Lmx1bO88609 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC13.56□□□□□ -0.24
Lmx1bO88609 Gm13365-201ENSMUST00000121188 973 ntBASIC13.56□□□□□ -0.24
Lmx1bO88609 Gm11745-201ENSMUST00000121669 448 ntBASIC13.56□□□□□ -0.24
Lmx1bO88609 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC13.56□□□□□ -0.24
Lmx1bO88609 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Lmx1bO88609 Gm20553-201ENSMUST00000204205 844 ntBASIC13.56□□□□□ -0.24
Lmx1bO88609 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lmx1bO88609 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Lmx1bO88609 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
Lmx1bO88609 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC13.56□□□□□ -0.24
Lmx1bO88609 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lmx1bO88609 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Lmx1bO88609 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lmx1bO88609 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lmx1bO88609 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lmx1bO88609 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lmx1bO88609 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lmx1bO88609 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Lmx1bO88609 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lmx1bO88609 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lmx1bO88609 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lmx1bO88609 Nrn1-204ENSMUST00000224323 1779 ntBASIC13.55□□□□□ -0.24
Lmx1bO88609 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Lmx1bO88609 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms