Protein–RNA interactions for Protein: O70209

Pdlim3, PDZ and LIM domain protein 3, mousemouse

Known RBP Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pdlim3O70209 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Pdlim3O70209 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Pdlim3O70209 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
Pdlim3O70209 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Pdlim3O70209 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Pdlim3O70209 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Pdlim3O70209 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Pdlim3O70209 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Pdlim3O70209 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Pdlim3O70209 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Pdlim3O70209 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Pdlim3O70209 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Pdlim3O70209 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Pdlim3O70209 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Pdlim3O70209 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Pdlim3O70209 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
Pdlim3O70209 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Pdlim3O70209 Gm15358-201ENSMUST00000119249 520 ntBASIC13.59□□□□□ -0.23
Pdlim3O70209 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC13.59□□□□□ -0.23
Pdlim3O70209 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC13.59□□□□□ -0.23
Pdlim3O70209 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC13.59□□□□□ -0.23
Pdlim3O70209 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC13.59□□□□□ -0.23
Pdlim3O70209 Gm27742-201ENSMUST00000184667 60 ntBASIC13.59□□□□□ -0.23
Pdlim3O70209 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC13.59□□□□□ -0.23
Pdlim3O70209 Gm8655-201ENSMUST00000221159 852 ntBASIC13.59□□□□□ -0.23
Pdlim3O70209 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC13.59□□□□□ -0.23
Pdlim3O70209 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Pdlim3O70209 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Pdlim3O70209 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Pdlim3O70209 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Pdlim3O70209 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC13.59□□□□□ -0.23
Pdlim3O70209 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Pdlim3O70209 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Pdlim3O70209 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Pdlim3O70209 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Pdlim3O70209 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Pdlim3O70209 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Pdlim3O70209 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Pdlim3O70209 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Pdlim3O70209 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Pdlim3O70209 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Pdlim3O70209 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Pdlim3O70209 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Pdlim3O70209 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.23
Pdlim3O70209 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Pdlim3O70209 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.23
Pdlim3O70209 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Pdlim3O70209 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
Pdlim3O70209 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Pdlim3O70209 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Pdlim3O70209 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Pdlim3O70209 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Pdlim3O70209 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Pdlim3O70209 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Pdlim3O70209 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Pdlim3O70209 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Pdlim3O70209 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Pdlim3O70209 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC13.58□□□□□ -0.24
Pdlim3O70209 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Pdlim3O70209 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Pdlim3O70209 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Pdlim3O70209 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC13.58□□□□□ -0.24
Pdlim3O70209 Gm23634-201ENSMUST00000175071 91 ntBASIC13.58□□□□□ -0.24
Pdlim3O70209 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Pdlim3O70209 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Pdlim3O70209 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
Pdlim3O70209 Gm27867-201ENSMUST00000184778 125 ntBASIC13.58□□□□□ -0.24
Pdlim3O70209 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Pdlim3O70209 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC13.58□□□□□ -0.24
Pdlim3O70209 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Pdlim3O70209 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Pdlim3O70209 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Pdlim3O70209 AC093926.2-201ENSMUST00000214468 1228 ntBASIC13.58□□□□□ -0.24
Pdlim3O70209 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Pdlim3O70209 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC13.58□□□□□ -0.24
Pdlim3O70209 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Pdlim3O70209 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Pdlim3O70209 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Pdlim3O70209 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Pdlim3O70209 AC157650.3-201ENSMUST00000225058 1476 ntBASIC13.58□□□□□ -0.24
Pdlim3O70209 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Pdlim3O70209 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Pdlim3O70209 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Pdlim3O70209 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Pdlim3O70209 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Pdlim3O70209 Nupl1-207ENSMUST00000225311 2475 ntBASIC13.58□□□□□ -0.24
Pdlim3O70209 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
Pdlim3O70209 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Pdlim3O70209 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Pdlim3O70209 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Pdlim3O70209 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Pdlim3O70209 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Pdlim3O70209 Gm7901-201ENSMUST00000120430 1597 ntBASIC13.58□□□□□ -0.24
Pdlim3O70209 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Pdlim3O70209 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Pdlim3O70209 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Pdlim3O70209 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Pdlim3O70209 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Pdlim3O70209 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Pdlim3O70209 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms