Protein–RNA interactions for Protein: J3QNX5

Shisa8, Cysteine-knot AMPAR-modulating protein 39, mousemouse

Predictions only

Length 399 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shisa8J3QNX5 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Gm17808-201ENSMUST00000200859 894 ntBASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Shisa8J3QNX5 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Gm8258-201ENSMUST00000055593 1449 ntBASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Gm7556-201ENSMUST00000201178 1084 ntBASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Gm43399-201ENSMUST00000202546 2374 ntBASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Shisa8J3QNX5 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Celf4-206ENSMUST00000224553 1729 ntBASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 CT025610.1-201ENSMUST00000224552 1786 ntBASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Shisa8J3QNX5 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Shisa8J3QNX5 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Shisa8J3QNX5 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Shisa8J3QNX5 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC13.66□□□□□ -0.22
Shisa8J3QNX5 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shisa8J3QNX5 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shisa8J3QNX5 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shisa8J3QNX5 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Shisa8J3QNX5 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
Shisa8J3QNX5 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
Shisa8J3QNX5 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC13.66□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms