Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Gm8775-201ENSMUST00000170943 1327 ntBASIC12.03□□□□□ -0.48
Chd6A3KFM7 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Taf6l-202ENSMUST00000010249 848 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Gm13047-201ENSMUST00000117116 815 ntBASIC12.03□□□□□ -0.48
Chd6A3KFM7 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Gm27631-201ENSMUST00000184163 466 ntBASIC12.03□□□□□ -0.48
Chd6A3KFM7 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Gm18893-201ENSMUST00000198416 943 ntBASIC12.03□□□□□ -0.48
Chd6A3KFM7 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC12.03□□□□□ -0.48
Chd6A3KFM7 AC139580.1-202ENSMUST00000223574 928 ntBASIC12.03□□□□□ -0.48
Chd6A3KFM7 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Mrps34-201ENSMUST00000043907 918 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Gm8566-201ENSMUST00000120174 465 ntBASIC12.03□□□□□ -0.48
Chd6A3KFM7 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Chd6A3KFM7 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Gm9299-201ENSMUST00000206392 1140 ntBASIC12.03□□□□□ -0.48
Chd6A3KFM7 AC154595.3-201ENSMUST00000224579 384 ntBASIC12.03□□□□□ -0.48
Chd6A3KFM7 CT010506.4-201ENSMUST00000225457 351 ntBASIC12.03□□□□□ -0.48
Chd6A3KFM7 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Gm13050-201ENSMUST00000122149 1345 ntBASIC12.03□□□□□ -0.48
Chd6A3KFM7 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd6A3KFM7 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC12.02□□□□□ -0.48
Chd6A3KFM7 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Chd6A3KFM7 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Chd6A3KFM7 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Chd6A3KFM7 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
Chd6A3KFM7 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Chd6A3KFM7 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Chd6A3KFM7 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Chd6A3KFM7 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Chd6A3KFM7 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Chd6A3KFM7 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Chd6A3KFM7 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Chd6A3KFM7 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd6A3KFM7 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd6A3KFM7 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Chd6A3KFM7 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC12.02□□□□□ -0.49
Chd6A3KFM7 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC12.02□□□□□ -0.49
Chd6A3KFM7 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC12.02□□□□□ -0.49
Chd6A3KFM7 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC12.02□□□□□ -0.49
Chd6A3KFM7 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd6A3KFM7 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd6A3KFM7 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Chd6A3KFM7 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd6A3KFM7 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC12.02□□□□□ -0.49
Chd6A3KFM7 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd6A3KFM7 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd6A3KFM7 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd6A3KFM7 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd6A3KFM7 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd6A3KFM7 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd6A3KFM7 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Chd6A3KFM7 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd6A3KFM7 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC12.02□□□□□ -0.49
Chd6A3KFM7 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Chd6A3KFM7 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Chd6A3KFM7 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd6A3KFM7 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Chd6A3KFM7 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Chd6A3KFM7 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd6A3KFM7 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Chd6A3KFM7 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd6A3KFM7 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC12.01□□□□□ -0.49
Chd6A3KFM7 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd6A3KFM7 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
Chd6A3KFM7 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd6A3KFM7 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd6A3KFM7 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd6A3KFM7 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC12.01□□□□□ -0.49
Chd6A3KFM7 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Chd6A3KFM7 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Chd6A3KFM7 Gm7286-201ENSMUST00000182691 1007 ntBASIC12.01□□□□□ -0.49
Chd6A3KFM7 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 43 ms