Protein–RNA interactions for Protein: Q9CQE8

RTRAF, RNA transcription, translation and transport factor protein, mousemouse

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTRAFQ9CQE8 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Gm30437-201ENSMUST00000206086 1201 ntBASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Slc35b2-207ENSMUST00000226086 850 ntBASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RTRAFQ9CQE8 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Gm12527-201ENSMUST00000117967 564 ntBASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
RTRAFQ9CQE8 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Gm43205-201ENSMUST00000198622 1968 ntBASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Gm13474-201ENSMUST00000122466 815 ntBASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Gm3375-201ENSMUST00000203929 796 ntBASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Gm7367-201ENSMUST00000057611 492 ntBASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Gm38318-201ENSMUST00000195769 1706 ntBASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RTRAFQ9CQE8 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
RTRAFQ9CQE8 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
RTRAFQ9CQE8 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC12.21□□□□□ -0.45
RTRAFQ9CQE8 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
RTRAFQ9CQE8 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
RTRAFQ9CQE8 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
RTRAFQ9CQE8 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
RTRAFQ9CQE8 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
RTRAFQ9CQE8 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
RTRAFQ9CQE8 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
RTRAFQ9CQE8 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
RTRAFQ9CQE8 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.45
RTRAFQ9CQE8 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms