Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Use1Q9CQ56 AC157650.3-201ENSMUST00000225058 1476 ntBASIC14.21□□□□□ -0.13
Use1Q9CQ56 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Use1Q9CQ56 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Use1Q9CQ56 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Use1Q9CQ56 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.13
Use1Q9CQ56 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Use1Q9CQ56 Gm12644-201ENSMUST00000119935 606 ntBASIC14.21□□□□□ -0.13
Use1Q9CQ56 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC14.21□□□□□ -0.13
Use1Q9CQ56 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Use1Q9CQ56 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC14.21□□□□□ -0.13
Use1Q9CQ56 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
Use1Q9CQ56 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Use1Q9CQ56 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Use1Q9CQ56 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Use1Q9CQ56 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC14.21□□□□□ -0.13
Use1Q9CQ56 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Use1Q9CQ56 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Use1Q9CQ56 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Use1Q9CQ56 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Use1Q9CQ56 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Use1Q9CQ56 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Use1Q9CQ56 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Use1Q9CQ56 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Use1Q9CQ56 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Use1Q9CQ56 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
Use1Q9CQ56 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Use1Q9CQ56 Gm38318-201ENSMUST00000195769 1706 ntBASIC14.21□□□□□ -0.14
Use1Q9CQ56 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC14.21□□□□□ -0.14
Use1Q9CQ56 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Use1Q9CQ56 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Use1Q9CQ56 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Use1Q9CQ56 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Use1Q9CQ56 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Use1Q9CQ56 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Use1Q9CQ56 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Use1Q9CQ56 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Use1Q9CQ56 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Use1Q9CQ56 Gm45760-201ENSMUST00000212190 1782 ntBASIC14.2□□□□□ -0.14
Use1Q9CQ56 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Use1Q9CQ56 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Use1Q9CQ56 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Use1Q9CQ56 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Use1Q9CQ56 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
Use1Q9CQ56 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Use1Q9CQ56 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC14.2□□□□□ -0.14
Use1Q9CQ56 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Use1Q9CQ56 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC14.2□□□□□ -0.14
Use1Q9CQ56 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Use1Q9CQ56 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Use1Q9CQ56 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC14.2□□□□□ -0.14
Use1Q9CQ56 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Use1Q9CQ56 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Use1Q9CQ56 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Use1Q9CQ56 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Use1Q9CQ56 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Use1Q9CQ56 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC14.2□□□□□ -0.14
Use1Q9CQ56 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Use1Q9CQ56 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Use1Q9CQ56 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Gm14780-201ENSMUST00000118387 2737 ntBASIC14.19□□□□□ -0.14
Use1Q9CQ56 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC14.19□□□□□ -0.14
Use1Q9CQ56 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Use1Q9CQ56 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms