Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
ShhQ62226 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC14.01□□□□□ -0.17
ShhQ62226 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC14.01□□□□□ -0.17
ShhQ62226 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
ShhQ62226 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ShhQ62226 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ShhQ62226 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ShhQ62226 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ShhQ62226 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
ShhQ62226 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ShhQ62226 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ShhQ62226 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC14□□□□□ -0.17
ShhQ62226 Gm27528-202ENSMUST00000222916 2012 ntBASIC14□□□□□ -0.17
ShhQ62226 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ShhQ62226 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC14□□□□□ -0.17
ShhQ62226 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ShhQ62226 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC14□□□□□ -0.17
ShhQ62226 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ShhQ62226 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ShhQ62226 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC14□□□□□ -0.17
ShhQ62226 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC14□□□□□ -0.17
ShhQ62226 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC14□□□□□ -0.17
ShhQ62226 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC14□□□□□ -0.17
ShhQ62226 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ShhQ62226 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ShhQ62226 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ShhQ62226 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ShhQ62226 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ShhQ62226 Gm13337-201ENSMUST00000119183 1594 ntBASIC14□□□□□ -0.17
ShhQ62226 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC14□□□□□ -0.17
ShhQ62226 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC14□□□□□ -0.17
ShhQ62226 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
ShhQ62226 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
ShhQ62226 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC13.99□□□□□ -0.17
ShhQ62226 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC13.99□□□□□ -0.17
ShhQ62226 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC13.99□□□□□ -0.17
ShhQ62226 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC13.99□□□□□ -0.17
ShhQ62226 Gm27646-201ENSMUST00000183989 110 ntBASIC13.99□□□□□ -0.17
ShhQ62226 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
ShhQ62226 CT025535.1-201ENSMUST00000227172 491 ntBASIC13.99□□□□□ -0.17
ShhQ62226 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC13.99□□□□□ -0.17
ShhQ62226 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
ShhQ62226 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC13.99□□□□□ -0.17
ShhQ62226 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
ShhQ62226 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC13.99□□□□□ -0.17
ShhQ62226 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
ShhQ62226 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
ShhQ62226 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
ShhQ62226 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
ShhQ62226 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC13.98□□□□□ -0.17
ShhQ62226 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
ShhQ62226 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
ShhQ62226 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
ShhQ62226 Fgf17-202ENSMUST00000227123 1336 ntBASIC13.98□□□□□ -0.17
ShhQ62226 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
ShhQ62226 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
ShhQ62226 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
ShhQ62226 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
ShhQ62226 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC13.98□□□□□ -0.17
ShhQ62226 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
ShhQ62226 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
ShhQ62226 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms