Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC14.31□□□□□ -0.12
Nr1h4Q60641 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nr1h4Q60641 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Nr1h4Q60641 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nr1h4Q60641 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nr1h4Q60641 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nr1h4Q60641 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nr1h4Q60641 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC14.3□□□□□ -0.12
Nr1h4Q60641 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC14.3□□□□□ -0.12
Nr1h4Q60641 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nr1h4Q60641 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
Nr1h4Q60641 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nr1h4Q60641 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Nr1h4Q60641 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Nr1h4Q60641 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nr1h4Q60641 Gm4459-201ENSMUST00000118750 468 ntBASIC14.3□□□□□ -0.12
Nr1h4Q60641 Gm6728-201ENSMUST00000178117 1065 ntBASIC14.3□□□□□ -0.12
Nr1h4Q60641 AC121577.1-201ENSMUST00000227302 707 ntBASIC14.3□□□□□ -0.12
Nr1h4Q60641 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nr1h4Q60641 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nr1h4Q60641 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nr1h4Q60641 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nr1h4Q60641 Gm5837-201ENSMUST00000191844 1369 ntBASIC14.3□□□□□ -0.12
Nr1h4Q60641 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nr1h4Q60641 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nr1h4Q60641 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nr1h4Q60641 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Nr1h4Q60641 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Nr1h4Q60641 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
Nr1h4Q60641 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nr1h4Q60641 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC14.3□□□□□ -0.12
Nr1h4Q60641 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Nr1h4Q60641 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC14.29□□□□□ -0.12
Nr1h4Q60641 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Celf4-206ENSMUST00000224553 1729 ntBASIC14.29□□□□□ -0.12
Nr1h4Q60641 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nr1h4Q60641 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nr1h4Q60641 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms