Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ercc3P49135 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ercc3P49135 Mir3113-201ENSMUST00000175478 76 ntBASIC17.82■□□□□ 0.44
Ercc3P49135 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC17.82■□□□□ 0.44
Ercc3P49135 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC17.82■□□□□ 0.44
Ercc3P49135 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC17.82■□□□□ 0.44
Ercc3P49135 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Ercc3P49135 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ercc3P49135 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ercc3P49135 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Ercc3P49135 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Ercc3P49135 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ercc3P49135 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ercc3P49135 Gm5049-201ENSMUST00000195878 1590 ntBASIC17.82■□□□□ 0.44
Ercc3P49135 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ercc3P49135 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ercc3P49135 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Ercc3P49135 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ercc3P49135 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ercc3P49135 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ercc3P49135 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
Ercc3P49135 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ercc3P49135 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ercc3P49135 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ercc3P49135 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ercc3P49135 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ercc3P49135 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ercc3P49135 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Ercc3P49135 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ercc3P49135 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC17.81■□□□□ 0.44
Ercc3P49135 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC17.81■□□□□ 0.44
Ercc3P49135 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ercc3P49135 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
Ercc3P49135 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ercc3P49135 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC17.81■□□□□ 0.44
Ercc3P49135 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Ercc3P49135 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC17.81■□□□□ 0.44
Ercc3P49135 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
Ercc3P49135 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ercc3P49135 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ercc3P49135 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ercc3P49135 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ercc3P49135 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ercc3P49135 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ercc3P49135 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Ercc3P49135 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ercc3P49135 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ercc3P49135 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ercc3P49135 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ercc3P49135 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ercc3P49135 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ercc3P49135 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Ercc3P49135 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC17.8■□□□□ 0.44
Ercc3P49135 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ercc3P49135 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ercc3P49135 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Ercc3P49135 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ercc3P49135 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC17.8■□□□□ 0.44
Ercc3P49135 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC17.8■□□□□ 0.44
Ercc3P49135 Gm12892-201ENSMUST00000117367 1146 ntBASIC17.8■□□□□ 0.44
Ercc3P49135 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC17.8■□□□□ 0.44
Ercc3P49135 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ercc3P49135 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Ercc3P49135 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC17.8■□□□□ 0.44
Ercc3P49135 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC17.8■□□□□ 0.44
Ercc3P49135 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Ercc3P49135 AC164567.1-201ENSMUST00000219185 960 ntBASIC17.8■□□□□ 0.44
Ercc3P49135 AC159295.1-201ENSMUST00000225326 940 ntBASIC17.8■□□□□ 0.44
Ercc3P49135 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ercc3P49135 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ercc3P49135 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ercc3P49135 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ercc3P49135 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ercc3P49135 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ercc3P49135 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ercc3P49135 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ercc3P49135 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC17.79■□□□□ 0.44
Ercc3P49135 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ercc3P49135 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ercc3P49135 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ercc3P49135 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ercc3P49135 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC17.79■□□□□ 0.44
Ercc3P49135 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ercc3P49135 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Ercc3P49135 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Ercc3P49135 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Ercc3P49135 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ercc3P49135 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC17.79■□□□□ 0.44
Ercc3P49135 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC17.79■□□□□ 0.44
Ercc3P49135 Celf4-206ENSMUST00000224553 1729 ntBASIC17.79■□□□□ 0.44
Ercc3P49135 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
Ercc3P49135 Gm9385-201ENSMUST00000117563 472 ntBASIC17.79■□□□□ 0.44
Ercc3P49135 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ercc3P49135 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ercc3P49135 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ercc3P49135 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ercc3P49135 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC17.79■□□□□ 0.44
Ercc3P49135 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ercc3P49135 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
Ercc3P49135 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC17.79■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms