Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC13.58□□□□□ -0.24
Rfx3P48381 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Rfx3P48381 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Rfx3P48381 AC160338.1-201ENSMUST00000214232 705 ntBASIC13.58□□□□□ -0.24
Rfx3P48381 AC160980.1-201ENSMUST00000224136 970 ntBASIC13.58□□□□□ -0.24
Rfx3P48381 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC13.58□□□□□ -0.24
Rfx3P48381 AC159093.1-201ENSMUST00000227779 380 ntBASIC13.58□□□□□ -0.24
Rfx3P48381 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Rfx3P48381 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Rfx3P48381 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Rfx3P48381 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Rfx3P48381 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Rfx3P48381 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
Rfx3P48381 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Rfx3P48381 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Rfx3P48381 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Rfx3P48381 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
Rfx3P48381 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Rfx3P48381 Gm43697-201ENSMUST00000199637 2581 ntBASIC13.58□□□□□ -0.24
Rfx3P48381 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Rfx3P48381 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Rfx3P48381 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC13.57□□□□□ -0.24
Rfx3P48381 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
Rfx3P48381 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Rfx3P48381 Gm44291-201ENSMUST00000203102 2865 ntBASIC13.57□□□□□ -0.24
Rfx3P48381 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC13.57□□□□□ -0.24
Rfx3P48381 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Rfx3P48381 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Rfx3P48381 Gm17971-201ENSMUST00000190239 806 ntBASIC13.57□□□□□ -0.24
Rfx3P48381 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Rfx3P48381 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Rfx3P48381 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC13.57□□□□□ -0.24
Rfx3P48381 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Rfx3P48381 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Rfx3P48381 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Rfx3P48381 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Rfx3P48381 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Rfx3P48381 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Rfx3P48381 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Rfx3P48381 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
Rfx3P48381 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Rfx3P48381 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Rfx3P48381 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Rfx3P48381 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Rfx3P48381 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC13.56□□□□□ -0.24
Rfx3P48381 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC13.56□□□□□ -0.24
Rfx3P48381 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Rfx3P48381 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Rfx3P48381 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Rfx3P48381 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Rfx3P48381 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Rfx3P48381 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Rfx3P48381 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Rfx3P48381 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
Rfx3P48381 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Rfx3P48381 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Rfx3P48381 Gm15358-201ENSMUST00000119249 520 ntBASIC13.56□□□□□ -0.24
Rfx3P48381 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC13.56□□□□□ -0.24
Rfx3P48381 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
Rfx3P48381 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Rfx3P48381 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Rfx3P48381 Gm28033-201ENSMUST00000184224 96 ntBASIC13.56□□□□□ -0.24
Rfx3P48381 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC13.56□□□□□ -0.24
Rfx3P48381 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC13.56□□□□□ -0.24
Rfx3P48381 AC158538.2-201ENSMUST00000225455 906 ntBASIC13.56□□□□□ -0.24
Rfx3P48381 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Rfx3P48381 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Rfx3P48381 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC13.56□□□□□ -0.24
Rfx3P48381 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Rfx3P48381 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Rfx3P48381 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Rfx3P48381 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Rfx3P48381 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Rfx3P48381 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Rfx3P48381 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms