Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RaraP11416 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
RaraP11416 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC16.25■□□□□ 0.19
RaraP11416 Gm21009-201ENSMUST00000197169 1669 ntBASIC16.25■□□□□ 0.19
RaraP11416 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RaraP11416 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC16.25■□□□□ 0.19
RaraP11416 Gm29361-201ENSMUST00000183323 2000 ntBASIC16.25■□□□□ 0.19
RaraP11416 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
RaraP11416 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC16.25■□□□□ 0.19
RaraP11416 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RaraP11416 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
RaraP11416 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
RaraP11416 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RaraP11416 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
RaraP11416 Gm5682-201ENSMUST00000173402 505 ntBASIC16.25■□□□□ 0.19
RaraP11416 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC16.25■□□□□ 0.19
RaraP11416 Gm6089-201ENSMUST00000197666 938 ntBASIC16.25■□□□□ 0.19
RaraP11416 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RaraP11416 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RaraP11416 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RaraP11416 Gm10313-201ENSMUST00000095320 1002 ntBASIC16.25■□□□□ 0.19
RaraP11416 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RaraP11416 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC16.25■□□□□ 0.19
RaraP11416 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
RaraP11416 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
RaraP11416 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
RaraP11416 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RaraP11416 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC16.24■□□□□ 0.19
RaraP11416 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
RaraP11416 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
RaraP11416 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
RaraP11416 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RaraP11416 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RaraP11416 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RaraP11416 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RaraP11416 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
RaraP11416 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
RaraP11416 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC16.24■□□□□ 0.19
RaraP11416 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RaraP11416 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RaraP11416 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RaraP11416 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RaraP11416 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
RaraP11416 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RaraP11416 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RaraP11416 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RaraP11416 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
RaraP11416 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RaraP11416 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RaraP11416 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RaraP11416 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
RaraP11416 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
RaraP11416 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
RaraP11416 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RaraP11416 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
RaraP11416 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
RaraP11416 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RaraP11416 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RaraP11416 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RaraP11416 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC16.23■□□□□ 0.19
RaraP11416 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
RaraP11416 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RaraP11416 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC16.23■□□□□ 0.19
RaraP11416 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RaraP11416 Gm34391-201ENSMUST00000203706 907 ntBASIC16.23■□□□□ 0.19
RaraP11416 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RaraP11416 Spr-ps1-201ENSMUST00000089584 605 ntBASIC16.23■□□□□ 0.19
RaraP11416 Mxra8os-201ENSMUST00000097740 687 ntBASIC16.23■□□□□ 0.19
RaraP11416 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RaraP11416 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
RaraP11416 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RaraP11416 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
RaraP11416 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
RaraP11416 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC16.23■□□□□ 0.19
RaraP11416 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RaraP11416 Gm45760-201ENSMUST00000212190 1782 ntBASIC16.23■□□□□ 0.19
RaraP11416 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RaraP11416 Ptprs-211ENSMUST00000223859 5588 ntBASIC16.23■□□□□ 0.19
RaraP11416 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RaraP11416 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RaraP11416 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RaraP11416 Gm3928-201ENSMUST00000121141 1307 ntBASIC16.22■□□□□ 0.19
RaraP11416 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RaraP11416 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RaraP11416 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
RaraP11416 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RaraP11416 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RaraP11416 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RaraP11416 AC162938.1-201ENSMUST00000213140 2323 ntBASIC16.22■□□□□ 0.19
RaraP11416 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RaraP11416 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
RaraP11416 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RaraP11416 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC16.22■□□□□ 0.19
RaraP11416 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC16.22■□□□□ 0.19
RaraP11416 Gm18489-201ENSMUST00000172565 551 ntBASIC16.22■□□□□ 0.19
RaraP11416 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC16.22■□□□□ 0.19
RaraP11416 Gm43767-201ENSMUST00000198933 381 ntBASIC16.22■□□□□ 0.19
RaraP11416 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RaraP11416 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RaraP11416 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms