Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Lire1P11260 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Lire1P11260 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC14.24□□□□□ -0.13
Lire1P11260 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Gm38376-201ENSMUST00000195493 2253 ntBASIC14.24□□□□□ -0.13
Lire1P11260 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Lire1P11260 Mir5126-201ENSMUST00000175513 77 ntBASIC14.24□□□□□ -0.13
Lire1P11260 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC14.24□□□□□ -0.13
Lire1P11260 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC14.24□□□□□ -0.13
Lire1P11260 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Lire1P11260 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Lire1P11260 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Lire1P11260 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC14.23□□□□□ -0.13
Lire1P11260 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC14.23□□□□□ -0.13
Lire1P11260 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC14.23□□□□□ -0.13
Lire1P11260 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC14.23□□□□□ -0.13
Lire1P11260 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC14.23□□□□□ -0.13
Lire1P11260 AC114585.2-202ENSMUST00000228094 426 ntBASIC14.23□□□□□ -0.13
Lire1P11260 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Lire1P11260 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC14.23□□□□□ -0.13
Lire1P11260 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lire1P11260 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lire1P11260 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lire1P11260 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Lire1P11260 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lire1P11260 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lire1P11260 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lire1P11260 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lire1P11260 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Lire1P11260 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lire1P11260 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lire1P11260 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lire1P11260 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC14.22□□□□□ -0.13
Lire1P11260 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lire1P11260 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Lire1P11260 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC14.22□□□□□ -0.13
Lire1P11260 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Lire1P11260 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lire1P11260 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lire1P11260 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lire1P11260 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lire1P11260 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lire1P11260 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lire1P11260 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC14.22□□□□□ -0.13
Lire1P11260 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lire1P11260 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lire1P11260 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
Lire1P11260 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Lire1P11260 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms