Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC17.4■□□□□ 0.38
Col1a1P11087 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col1a1P11087 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col1a1P11087 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col1a1P11087 Gm8242-201ENSMUST00000193029 1420 ntBASIC17.4■□□□□ 0.38
Col1a1P11087 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col1a1P11087 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col1a1P11087 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col1a1P11087 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col1a1P11087 Gm6266-201ENSMUST00000203844 806 ntBASIC17.4■□□□□ 0.38
Col1a1P11087 Gm19220-201ENSMUST00000222682 803 ntBASIC17.4■□□□□ 0.38
Col1a1P11087 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Col1a1P11087 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Col1a1P11087 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col1a1P11087 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col1a1P11087 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col1a1P11087 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col1a1P11087 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col1a1P11087 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col1a1P11087 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Col1a1P11087 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Col1a1P11087 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col1a1P11087 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col1a1P11087 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col1a1P11087 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Col1a1P11087 Mir125a-201ENSMUST00000083545 68 ntBASIC17.39■□□□□ 0.37
Col1a1P11087 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Col1a1P11087 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col1a1P11087 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
Col1a1P11087 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col1a1P11087 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col1a1P11087 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col1a1P11087 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Col1a1P11087 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col1a1P11087 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC17.38■□□□□ 0.37
Col1a1P11087 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col1a1P11087 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col1a1P11087 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col1a1P11087 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
Col1a1P11087 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC17.38■□□□□ 0.37
Col1a1P11087 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC17.38■□□□□ 0.37
Col1a1P11087 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC17.38■□□□□ 0.37
Col1a1P11087 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Col1a1P11087 Mir1938-201ENSMUST00000158746 100 ntBASIC17.38■□□□□ 0.37
Col1a1P11087 Gm17150-201ENSMUST00000165577 381 ntBASIC17.38■□□□□ 0.37
Col1a1P11087 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC17.38■□□□□ 0.37
Col1a1P11087 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC17.38■□□□□ 0.37
Col1a1P11087 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col1a1P11087 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col1a1P11087 Gm10313-201ENSMUST00000095320 1002 ntBASIC17.38■□□□□ 0.37
Col1a1P11087 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col1a1P11087 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col1a1P11087 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col1a1P11087 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Col1a1P11087 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Col1a1P11087 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC17.38■□□□□ 0.37
Col1a1P11087 Tcf21-202ENSMUST00000218002 1788 ntBASIC17.38■□□□□ 0.37
Col1a1P11087 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Col1a1P11087 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Col1a1P11087 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col1a1P11087 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col1a1P11087 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col1a1P11087 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col1a1P11087 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Col1a1P11087 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col1a1P11087 Ldha-ps-201ENSMUST00000119390 995 ntBASIC17.37■□□□□ 0.37
Col1a1P11087 Gm15806-201ENSMUST00000120696 955 ntBASIC17.37■□□□□ 0.37
Col1a1P11087 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC17.37■□□□□ 0.37
Col1a1P11087 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col1a1P11087 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC17.37■□□□□ 0.37
Col1a1P11087 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col1a1P11087 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col1a1P11087 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC17.37■□□□□ 0.37
Col1a1P11087 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col1a1P11087 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col1a1P11087 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col1a1P11087 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col1a1P11087 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Col1a1P11087 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col1a1P11087 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col1a1P11087 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Col1a1P11087 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Col1a1P11087 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col1a1P11087 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col1a1P11087 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC17.37■□□□□ 0.37
Col1a1P11087 Gm15824-201ENSMUST00000119516 955 ntBASIC17.37■□□□□ 0.37
Col1a1P11087 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col1a1P11087 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC17.37■□□□□ 0.37
Col1a1P11087 AC155286.1-201ENSMUST00000218632 448 ntBASIC17.37■□□□□ 0.37
Col1a1P11087 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC17.37■□□□□ 0.37
Col1a1P11087 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC17.37■□□□□ 0.37
Col1a1P11087 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col1a1P11087 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col1a1P11087 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col1a1P11087 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col1a1P11087 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col1a1P11087 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col1a1P11087 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col1a1P11087 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col1a1P11087 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 54.6 ms