Protein–RNA interactions for Protein: O88551

Cldn1, Claudin-1, mousemouse

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldn1O88551 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cldn1O88551 Gm16198-201ENSMUST00000118766 670 ntBASIC12.89□□□□□ -0.35
Cldn1O88551 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC12.89□□□□□ -0.35
Cldn1O88551 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC12.89□□□□□ -0.35
Cldn1O88551 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cldn1O88551 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cldn1O88551 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC12.89□□□□□ -0.35
Cldn1O88551 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cldn1O88551 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cldn1O88551 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
Cldn1O88551 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC12.89□□□□□ -0.35
Cldn1O88551 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cldn1O88551 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cldn1O88551 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cldn1O88551 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Cldn1O88551 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Cldn1O88551 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Cldn1O88551 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC12.88□□□□□ -0.35
Cldn1O88551 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC12.88□□□□□ -0.35
Cldn1O88551 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Gm11453-201ENSMUST00000117318 1007 ntBASIC12.88□□□□□ -0.35
Cldn1O88551 Gm14127-201ENSMUST00000117906 678 ntBASIC12.88□□□□□ -0.35
Cldn1O88551 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC12.88□□□□□ -0.35
Cldn1O88551 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC12.88□□□□□ -0.35
Cldn1O88551 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC12.88□□□□□ -0.35
Cldn1O88551 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
Cldn1O88551 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC12.88□□□□□ -0.35
Cldn1O88551 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Cldn1O88551 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Cldn1O88551 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Cldn1O88551 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC12.87□□□□□ -0.35
Cldn1O88551 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC12.87□□□□□ -0.35
Cldn1O88551 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC12.87□□□□□ -0.35
Cldn1O88551 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC12.87□□□□□ -0.35
Cldn1O88551 AC158538.2-201ENSMUST00000225455 906 ntBASIC12.87□□□□□ -0.35
Cldn1O88551 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Cldn1O88551 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC12.87□□□□□ -0.35
Cldn1O88551 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Cldn1O88551 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Cldn1O88551 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Cldn1O88551 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cldn1O88551 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cldn1O88551 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cldn1O88551 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cldn1O88551 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cldn1O88551 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC12.86□□□□□ -0.35
Cldn1O88551 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cldn1O88551 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cldn1O88551 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC12.86□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms