Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Hmgb3O54879 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Hmgb3O54879 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Hmgb3O54879 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Hmgb3O54879 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Hmgb3O54879 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Hmgb3O54879 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Hmgb3O54879 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Hmgb3O54879 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Hmgb3O54879 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Hmgb3O54879 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Hmgb3O54879 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Hmgb3O54879 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Hmgb3O54879 Gm16061-201ENSMUST00000122167 857 ntBASIC12.46□□□□□ -0.41
Hmgb3O54879 Gm13474-201ENSMUST00000122466 815 ntBASIC12.46□□□□□ -0.41
Hmgb3O54879 Gm26039-201ENSMUST00000158152 144 ntBASIC12.46□□□□□ -0.41
Hmgb3O54879 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC12.46□□□□□ -0.41
Hmgb3O54879 Gm6257-201ENSMUST00000163864 910 ntBASIC12.46□□□□□ -0.41
Hmgb3O54879 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Hmgb3O54879 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Hmgb3O54879 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Hmgb3O54879 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Hmgb3O54879 Gm7669-201ENSMUST00000210184 1603 ntBASIC12.46□□□□□ -0.41
Hmgb3O54879 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Hmgb3O54879 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Hmgb3O54879 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Hmgb3O54879 Cds2-201ENSMUST00000089461 8073 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Hmgb3O54879 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Hmgb3O54879 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Hmgb3O54879 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC12.46□□□□□ -0.42
Hmgb3O54879 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC12.46□□□□□ -0.42
Hmgb3O54879 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Hmgb3O54879 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Hmgb3O54879 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC12.46□□□□□ -0.42
Hmgb3O54879 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Hmgb3O54879 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC12.46□□□□□ -0.42
Hmgb3O54879 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
Hmgb3O54879 Gpr179-201ENSMUST00000093942 9219 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Hmgb3O54879 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Hmgb3O54879 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC12.45□□□□□ -0.42
Hmgb3O54879 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Ntrk2-201ENSMUST00000079828 8744 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC12.45□□□□□ -0.42
Hmgb3O54879 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC12.45□□□□□ -0.42
Hmgb3O54879 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC12.45□□□□□ -0.42
Hmgb3O54879 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC12.45□□□□□ -0.42
Hmgb3O54879 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC12.45□□□□□ -0.42
Hmgb3O54879 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Mir5122-201ENSMUST00000175004 89 ntBASIC12.45□□□□□ -0.42
Hmgb3O54879 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Hmgb3O54879 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Adgrl3-201ENSMUST00000036068 6203 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Hmgb3O54879 Adgrl3-202ENSMUST00000072521 6203 ntAPPRIS P3 TSL 5 BASIC12.45□□□□□ -0.42
Hmgb3O54879 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC12.45□□□□□ -0.42
Hmgb3O54879 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hmgb3O54879 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC12.45□□□□□ -0.42
Hmgb3O54879 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hmgb3O54879 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC12.44□□□□□ -0.42
Hmgb3O54879 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hmgb3O54879 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hmgb3O54879 Ptprt-203ENSMUST00000109443 12112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hmgb3O54879 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hmgb3O54879 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hmgb3O54879 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Hmgb3O54879 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hmgb3O54879 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hmgb3O54879 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Hmgb3O54879 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hmgb3O54879 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Hmgb3O54879 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC12.44□□□□□ -0.42
Hmgb3O54879 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC12.44□□□□□ -0.42
Hmgb3O54879 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC12.44□□□□□ -0.42
Hmgb3O54879 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hmgb3O54879 Pcnt-201ENSMUST00000001179 9331 ntAPPRIS P2 TSL 2 BASIC12.44□□□□□ -0.42
Hmgb3O54879 Gm43509-201ENSMUST00000196551 2594 ntBASIC12.44□□□□□ -0.42
Hmgb3O54879 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hmgb3O54879 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hmgb3O54879 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 85.6 ms