Protein–RNA interactions for Protein: O35235

Tnfsf11, Tumor necrosis factor ligand superfamily member 11, mousemouse

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf11O35235 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Gm19863-201ENSMUST00000192480 2218 ntBASIC11.73□□□□□ -0.53
Tnfsf11O35235 Gm43799-201ENSMUST00000201845 579 ntBASIC11.73□□□□□ -0.53
Tnfsf11O35235 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC11.73□□□□□ -0.53
Tnfsf11O35235 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Ntrk2-209ENSMUST00000225950 2640 ntBASIC11.73□□□□□ -0.53
Tnfsf11O35235 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Tnfsf11O35235 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Gm14722-201ENSMUST00000118943 689 ntBASIC11.72□□□□□ -0.53
Tnfsf11O35235 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC11.72□□□□□ -0.53
Tnfsf11O35235 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC11.72□□□□□ -0.53
Tnfsf11O35235 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Tnfsf11O35235 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Tnfsf11O35235 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Tnfsf11O35235 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Tnfsf11O35235 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Tnfsf11O35235 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Tnfsf11O35235 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC11.71□□□□□ -0.53
Tnfsf11O35235 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Tnfsf11O35235 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Tnfsf11O35235 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Tnfsf11O35235 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Tnfsf11O35235 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Tnfsf11O35235 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Tnfsf11O35235 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Tnfsf11O35235 Gm7507-201ENSMUST00000183053 1008 ntBASIC11.71□□□□□ -0.53
Tnfsf11O35235 Gm21559-201ENSMUST00000220638 855 ntBASIC11.71□□□□□ -0.53
Tnfsf11O35235 Gm8587-201ENSMUST00000076538 843 ntBASIC11.71□□□□□ -0.53
Tnfsf11O35235 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Tnfsf11O35235 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Tnfsf11O35235 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Tnfsf11O35235 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Tnfsf11O35235 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
Tnfsf11O35235 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Tnfsf11O35235 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Tnfsf11O35235 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Tnfsf11O35235 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms