Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Gm9694-201ENSMUST00000193347 1189 ntBASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 AC153881.1-201ENSMUST00000214448 284 ntBASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc9Q8VC31 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Gm37105-201ENSMUST00000192251 2085 ntBASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Mir1199-201ENSMUST00000117015 119 ntBASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Gm10812-201ENSMUST00000099864 546 ntBASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Gm5049-201ENSMUST00000195878 1590 ntBASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Gm44241-201ENSMUST00000203230 1662 ntBASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc9Q8VC31 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc9Q8VC31 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc9Q8VC31 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc9Q8VC31 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Ccdc9Q8VC31 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC18.11■□□□□ 0.49
Ccdc9Q8VC31 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc9Q8VC31 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc9Q8VC31 Gm24841-201ENSMUST00000158676 357 ntBASIC18.11■□□□□ 0.49
Ccdc9Q8VC31 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Ccdc9Q8VC31 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc9Q8VC31 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc9Q8VC31 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc9Q8VC31 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc9Q8VC31 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc9Q8VC31 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc9Q8VC31 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc9Q8VC31 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc9Q8VC31 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Ccdc9Q8VC31 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc9Q8VC31 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc9Q8VC31 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Ccdc9Q8VC31 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc9Q8VC31 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc9Q8VC31 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc9Q8VC31 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc9Q8VC31 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc9Q8VC31 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc9Q8VC31 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc9Q8VC31 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc9Q8VC31 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc9Q8VC31 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc9Q8VC31 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc9Q8VC31 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc9Q8VC31 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC18.1■□□□□ 0.49
Ccdc9Q8VC31 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Ccdc9Q8VC31 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc9Q8VC31 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
Ccdc9Q8VC31 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc9Q8VC31 Gm43056-201ENSMUST00000197865 2791 ntBASIC18.1■□□□□ 0.49
Ccdc9Q8VC31 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc9Q8VC31 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC18.1■□□□□ 0.49
Ccdc9Q8VC31 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Ccdc9Q8VC31 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC18.09■□□□□ 0.49
Ccdc9Q8VC31 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Ccdc9Q8VC31 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 11.1 ms