Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim47Q8C0E3 Nrn1-204ENSMUST00000224323 1779 ntBASIC16.66■□□□□ 0.26
Trim47Q8C0E3 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim47Q8C0E3 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim47Q8C0E3 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim47Q8C0E3 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim47Q8C0E3 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Trim47Q8C0E3 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC16.66■□□□□ 0.26
Trim47Q8C0E3 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Gm16026-204ENSMUST00000162652 683 ntBASIC16.65■□□□□ 0.26
Trim47Q8C0E3 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Gm43767-201ENSMUST00000198933 381 ntBASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Sybu-209ENSMUST00000228639 4113 ntBASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim47Q8C0E3 Gm13332-201ENSMUST00000120451 1398 ntBASIC16.64■□□□□ 0.26
Trim47Q8C0E3 Gm43195-201ENSMUST00000200614 2332 ntBASIC16.64■□□□□ 0.25
Trim47Q8C0E3 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim47Q8C0E3 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim47Q8C0E3 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Trim47Q8C0E3 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim47Q8C0E3 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim47Q8C0E3 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC16.64■□□□□ 0.25
Trim47Q8C0E3 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Trim47Q8C0E3 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim47Q8C0E3 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim47Q8C0E3 Gm11745-201ENSMUST00000121669 448 ntBASIC16.64■□□□□ 0.25
Trim47Q8C0E3 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim47Q8C0E3 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Trim47Q8C0E3 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim47Q8C0E3 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC16.64■□□□□ 0.25
Trim47Q8C0E3 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim47Q8C0E3 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim47Q8C0E3 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim47Q8C0E3 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC16.64■□□□□ 0.25
Trim47Q8C0E3 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim47Q8C0E3 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim47Q8C0E3 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim47Q8C0E3 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Trim47Q8C0E3 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim47Q8C0E3 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim47Q8C0E3 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Trim47Q8C0E3 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trim47Q8C0E3 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trim47Q8C0E3 Gm15593-201ENSMUST00000122085 1008 ntBASIC16.63■□□□□ 0.25
Trim47Q8C0E3 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC16.63■□□□□ 0.25
Trim47Q8C0E3 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trim47Q8C0E3 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim47Q8C0E3 Gm26308-201ENSMUST00000157768 69 ntBASIC16.63■□□□□ 0.25
Trim47Q8C0E3 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC16.63■□□□□ 0.25
Trim47Q8C0E3 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC16.63■□□□□ 0.25
Trim47Q8C0E3 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim47Q8C0E3 Gm15823-201ENSMUST00000064305 670 ntBASIC16.63■□□□□ 0.25
Trim47Q8C0E3 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim47Q8C0E3 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim47Q8C0E3 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim47Q8C0E3 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Trim47Q8C0E3 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim47Q8C0E3 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim47Q8C0E3 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim47Q8C0E3 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim47Q8C0E3 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim47Q8C0E3 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim47Q8C0E3 Mir1895-201ENSMUST00000122615 79 ntBASIC16.62■□□□□ 0.25
Trim47Q8C0E3 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC16.62■□□□□ 0.25
Trim47Q8C0E3 Gm5628-201ENSMUST00000222318 1049 ntBASIC16.62■□□□□ 0.25
Trim47Q8C0E3 CT030684.1-201ENSMUST00000227292 914 ntBASIC16.62■□□□□ 0.25
Trim47Q8C0E3 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC16.62■□□□□ 0.25
Trim47Q8C0E3 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
Trim47Q8C0E3 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC16.62■□□□□ 0.25
Trim47Q8C0E3 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Trim47Q8C0E3 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim47Q8C0E3 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim47Q8C0E3 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim47Q8C0E3 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim47Q8C0E3 Zkscan3-208ENSMUST00000224820 5398 ntBASIC16.62■□□□□ 0.25
Trim47Q8C0E3 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim47Q8C0E3 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms